Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SMG8-203ENST00000578922 2178 ntBASIC13.91□□□□□ -0.18
COL7A1Q02388 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC13.91□□□□□ -0.18
COL7A1Q02388 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
COL7A1Q02388 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.91□□□□□ -0.18
COL7A1Q02388 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.91□□□□□ -0.18
COL7A1Q02388 BX276092.5-203ENST00000456199 560 ntBASIC13.91□□□□□ -0.18
COL7A1Q02388 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC13.91□□□□□ -0.18
COL7A1Q02388 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL7A1Q02388 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC13.9□□□□□ -0.18
COL7A1Q02388 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL7A1Q02388 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 FP700111.2-201ENST00000619190 1892 ntBASIC13.9□□□□□ -0.18
COL7A1Q02388 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC13.9□□□□□ -0.18
COL7A1Q02388 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 CHCHD2P8-201ENST00000429873 447 ntBASIC13.9□□□□□ -0.18
COL7A1Q02388 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL7A1Q02388 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC13.9□□□□□ -0.18
COL7A1Q02388 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC13.9□□□□□ -0.18
COL7A1Q02388 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
COL7A1Q02388 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.9□□□□□ -0.18
COL7A1Q02388 HLA-F-220ENST00000434407 884 ntBASIC13.9□□□□□ -0.18
COL7A1Q02388 LINC00167-201ENST00000530583 1419 ntBASIC13.9□□□□□ -0.18
COL7A1Q02388 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL7A1Q02388 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
COL7A1Q02388 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
COL7A1Q02388 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC13.89□□□□□ -0.19
COL7A1Q02388 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
COL7A1Q02388 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.89□□□□□ -0.19
COL7A1Q02388 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL7A1Q02388 AC117500.6-201ENST00000624871 588 ntBASIC13.89□□□□□ -0.19
COL7A1Q02388 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC13.89□□□□□ -0.19
COL7A1Q02388 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL7A1Q02388 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.89□□□□□ -0.19
COL7A1Q02388 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.89□□□□□ -0.19
COL7A1Q02388 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
COL7A1Q02388 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC13.89□□□□□ -0.19
COL7A1Q02388 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC13.89□□□□□ -0.19
COL7A1Q02388 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 AC244015.2-201ENST00000616358 1861 ntBASIC13.89□□□□□ -0.19
COL7A1Q02388 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC13.89□□□□□ -0.19
COL7A1Q02388 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL7A1Q02388 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC13.88□□□□□ -0.19
COL7A1Q02388 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.88□□□□□ -0.19
COL7A1Q02388 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
COL7A1Q02388 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.88□□□□□ -0.19
COL7A1Q02388 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC13.88□□□□□ -0.19
COL7A1Q02388 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL7A1Q02388 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC13.88□□□□□ -0.19
COL7A1Q02388 DPP3P2-201ENST00000416030 1696 ntBASIC13.88□□□□□ -0.19
COL7A1Q02388 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC13.88□□□□□ -0.19
COL7A1Q02388 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC13.88□□□□□ -0.19
COL7A1Q02388 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC13.88□□□□□ -0.19
COL7A1Q02388 SLC25A1P1-201ENST00000528351 927 ntBASIC13.88□□□□□ -0.19
COL7A1Q02388 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.88□□□□□ -0.19
COL7A1Q02388 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC13.88□□□□□ -0.19
COL7A1Q02388 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms