Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.68■□□□□ 0.26
ABCA4P78363 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ABCA4P78363 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC16.68■□□□□ 0.26
ABCA4P78363 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.68■□□□□ 0.26
ABCA4P78363 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.68■□□□□ 0.26
ABCA4P78363 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ABCA4P78363 TMEM179-206ENST00000616017 1645 ntBASIC16.68■□□□□ 0.26
ABCA4P78363 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 CA15P1-201ENST00000481698 905 ntBASIC16.68■□□□□ 0.26
ABCA4P78363 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.68■□□□□ 0.26
ABCA4P78363 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.68■□□□□ 0.26
ABCA4P78363 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.68■□□□□ 0.26
ABCA4P78363 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.68■□□□□ 0.26
ABCA4P78363 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
ABCA4P78363 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 AC073314.1-201ENST00000568729 2216 ntBASIC16.68■□□□□ 0.26
ABCA4P78363 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ABCA4P78363 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
ABCA4P78363 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.67■□□□□ 0.26
ABCA4P78363 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 AC092667.1-201ENST00000434301 2586 ntBASIC16.67■□□□□ 0.26
ABCA4P78363 KRT8P41-201ENST00000533985 1514 ntBASIC16.67■□□□□ 0.26
ABCA4P78363 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.67■□□□□ 0.26
ABCA4P78363 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.67■□□□□ 0.26
ABCA4P78363 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.67■□□□□ 0.26
ABCA4P78363 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.67■□□□□ 0.26
ABCA4P78363 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ABCA4P78363 AC008622.2-201ENST00000617006 1229 ntBASIC16.67■□□□□ 0.26
ABCA4P78363 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.67■□□□□ 0.26
ABCA4P78363 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA4P78363 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA4P78363 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.66■□□□□ 0.26
ABCA4P78363 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.66■□□□□ 0.26
ABCA4P78363 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.66■□□□□ 0.26
ABCA4P78363 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.66■□□□□ 0.26
ABCA4P78363 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.66■□□□□ 0.26
ABCA4P78363 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.66■□□□□ 0.26
ABCA4P78363 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.66■□□□□ 0.26
ABCA4P78363 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.66■□□□□ 0.26
ABCA4P78363 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.66■□□□□ 0.26
ABCA4P78363 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.66■□□□□ 0.26
ABCA4P78363 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
ABCA4P78363 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 SLC25A1P2-201ENST00000430693 912 ntBASIC16.66■□□□□ 0.26
ABCA4P78363 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.66■□□□□ 0.26
ABCA4P78363 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA4P78363 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.66■□□□□ 0.26
ABCA4P78363 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
ABCA4P78363 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms