Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.78■□□□□ 0.6
HNF4AP41235 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.78■□□□□ 0.6
HNF4AP41235 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
HNF4AP41235 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.78■□□□□ 0.6
HNF4AP41235 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HNF4AP41235 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.78■□□□□ 0.6
HNF4AP41235 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HNF4AP41235 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HNF4AP41235 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.77■□□□□ 0.6
HNF4AP41235 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.77■□□□□ 0.6
HNF4AP41235 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
HNF4AP41235 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 KRT8P8-201ENST00000434750 1448 ntBASIC18.77■□□□□ 0.6
HNF4AP41235 AL032819.2-201ENST00000624543 2162 ntBASIC18.77■□□□□ 0.6
HNF4AP41235 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
HNF4AP41235 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.77■□□□□ 0.6
HNF4AP41235 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.77■□□□□ 0.6
HNF4AP41235 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.77■□□□□ 0.6
HNF4AP41235 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
HNF4AP41235 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.77■□□□□ 0.6
HNF4AP41235 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HNF4AP41235 AC120498.9-201ENST00000339021 3867 ntBASIC18.77■□□□□ 0.6
HNF4AP41235 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.77■□□□□ 0.59
HNF4AP41235 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HNF4AP41235 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
HNF4AP41235 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.77■□□□□ 0.59
HNF4AP41235 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.76■□□□□ 0.59
HNF4AP41235 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HNF4AP41235 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 KRT18P29-201ENST00000397031 1267 ntBASIC18.76■□□□□ 0.59
HNF4AP41235 KRT18P16-201ENST00000510337 1294 ntBASIC18.76■□□□□ 0.59
HNF4AP41235 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.76■□□□□ 0.59
HNF4AP41235 PRKY-204ENST00000533551 1019 ntBASIC18.76■□□□□ 0.59
HNF4AP41235 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 AL023875.1-201ENST00000640777 796 ntBASIC18.76■□□□□ 0.59
HNF4AP41235 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.76■□□□□ 0.59
HNF4AP41235 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.76■□□□□ 0.59
HNF4AP41235 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HNF4AP41235 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 ZNF815P-204ENST00000434898 1737 ntBASIC18.75■□□□□ 0.59
HNF4AP41235 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.75■□□□□ 0.59
HNF4AP41235 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HNF4AP41235 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.74■□□□□ 0.59
HNF4AP41235 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms