Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.43■□□□□ 0.54
RORAP35398 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RORAP35398 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RORAP35398 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RORAP35398 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RORAP35398 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
RORAP35398 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RORAP35398 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.42■□□□□ 0.54
RORAP35398 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RORAP35398 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.42■□□□□ 0.54
RORAP35398 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
RORAP35398 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.42■□□□□ 0.54
RORAP35398 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.42■□□□□ 0.54
RORAP35398 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.42■□□□□ 0.54
RORAP35398 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.42■□□□□ 0.54
RORAP35398 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
RORAP35398 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.42■□□□□ 0.54
RORAP35398 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RORAP35398 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.42■□□□□ 0.54
RORAP35398 LINC01568-207ENST00000641790 1380 ntBASIC18.42■□□□□ 0.54
RORAP35398 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RORAP35398 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RORAP35398 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.41■□□□□ 0.54
RORAP35398 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RORAP35398 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.41■□□□□ 0.54
RORAP35398 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.41■□□□□ 0.54
RORAP35398 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.41■□□□□ 0.54
RORAP35398 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.41■□□□□ 0.54
RORAP35398 AC010331.1-201ENST00000611423 582 ntBASIC18.41■□□□□ 0.54
RORAP35398 AC130371.2-201ENST00000619443 611 ntBASIC18.41■□□□□ 0.54
RORAP35398 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RORAP35398 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RORAP35398 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RORAP35398 RCC2P6-201ENST00000526625 1557 ntBASIC18.41■□□□□ 0.54
RORAP35398 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
RORAP35398 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RORAP35398 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
RORAP35398 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
RORAP35398 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.4■□□□□ 0.54
RORAP35398 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.4■□□□□ 0.54
RORAP35398 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.4■□□□□ 0.54
RORAP35398 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.4■□□□□ 0.54
RORAP35398 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.4■□□□□ 0.54
RORAP35398 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RORAP35398 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.4■□□□□ 0.54
RORAP35398 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.4■□□□□ 0.54
RORAP35398 AC005363.2-201ENST00000618631 242 ntBASIC18.4■□□□□ 0.54
RORAP35398 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RORAP35398 TCF3P1-201ENST00000423021 1937 ntBASIC18.4■□□□□ 0.54
RORAP35398 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.4■□□□□ 0.54
RORAP35398 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RORAP35398 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RORAP35398 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
RORAP35398 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.4■□□□□ 0.54
RORAP35398 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
RORAP35398 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RORAP35398 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.4■□□□□ 0.54
RORAP35398 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
RORAP35398 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.54
RORAP35398 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 149.5 ms