Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TPM1P09493 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
TPM1P09493 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.33■■□□□ 1.01
TPM1P09493 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.33■■□□□ 1.01
TPM1P09493 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
TPM1P09493 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.33■■□□□ 1.01
TPM1P09493 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.33■■□□□ 1.01
TPM1P09493 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
TPM1P09493 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TPM1P09493 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TPM1P09493 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
TPM1P09493 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TPM1P09493 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
TPM1P09493 CYP2T3P-201ENST00000601990 817 ntBASIC21.33■■□□□ 1.01
TPM1P09493 AC069236.1-201ENST00000604339 616 ntBASIC21.33■■□□□ 1.01
TPM1P09493 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
TPM1P09493 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TPM1P09493 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.33■■□□□ 1
TPM1P09493 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TPM1P09493 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.33■■□□□ 1
TPM1P09493 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
TPM1P09493 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TPM1P09493 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.33■■□□□ 1
TPM1P09493 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TPM1P09493 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
TPM1P09493 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.32■■□□□ 1
TPM1P09493 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.32■■□□□ 1
TPM1P09493 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.32■■□□□ 1
TPM1P09493 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.32■■□□□ 1
TPM1P09493 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.32■■□□□ 1
TPM1P09493 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.32■■□□□ 1
TPM1P09493 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.32■■□□□ 1
TPM1P09493 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 AC008694.1-202ENST00000636953 945 ntBASIC21.32■■□□□ 1
TPM1P09493 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TPM1P09493 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.32■■□□□ 1
TPM1P09493 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.32■■□□□ 1
TPM1P09493 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.32■■□□□ 1
TPM1P09493 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.31■■□□□ 1
TPM1P09493 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.31■■□□□ 1
TPM1P09493 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
TPM1P09493 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.31■■□□□ 1
TPM1P09493 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.31■■□□□ 1
TPM1P09493 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.31■■□□□ 1
TPM1P09493 AC137761.2-201ENST00000561729 223 ntBASIC21.31■■□□□ 1
TPM1P09493 AC145350.3-201ENST00000569033 163 ntBASIC21.31■■□□□ 1
TPM1P09493 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.31■■□□□ 1
TPM1P09493 AL589743.5-201ENST00000616611 1050 ntBASIC21.31■■□□□ 1
TPM1P09493 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.31■■□□□ 1
TPM1P09493 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.31■■□□□ 1
TPM1P09493 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
TPM1P09493 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.31■■□□□ 1
TPM1P09493 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TPM1P09493 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.31■■□□□ 1
TPM1P09493 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
TPM1P09493 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.31■■□□□ 1
TPM1P09493 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TPM1P09493 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TPM1P09493 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
TPM1P09493 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.3■■□□□ 1
TPM1P09493 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
TPM1P09493 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
TPM1P09493 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.3■■□□□ 1
TPM1P09493 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.3■■□□□ 1
TPM1P09493 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
TPM1P09493 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
TPM1P09493 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
TPM1P09493 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.3■■□□□ 1
TPM1P09493 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TPM1P09493 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
TPM1P09493 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.3■■□□□ 1
TPM1P09493 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TPM1P09493 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.3■■□□□ 1
TPM1P09493 AC068338.2-201ENST00000563278 1430 ntBASIC21.29■■□□□ 1
TPM1P09493 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TPM1P09493 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.29■■□□□ 1
TPM1P09493 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.29■■□□□ 1
TPM1P09493 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.29■■□□□ 1
TPM1P09493 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
TPM1P09493 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TPM1P09493 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TPM1P09493 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
TPM1P09493 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.29■■□□□ 1
TPM1P09493 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
TPM1P09493 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.29■■□□□ 1
TPM1P09493 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TPM1P09493 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms