Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGB1P09429 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
HMGB1P09429 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGB1P09429 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGB1P09429 AC141586.3-201ENST00000562166 1838 ntBASIC22.88■■□□□ 1.25
HMGB1P09429 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGB1P09429 KRASP1-201ENST00000407852 552 ntBASIC22.88■■□□□ 1.25
HMGB1P09429 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC22.88■■□□□ 1.25
HMGB1P09429 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGB1P09429 AC124016.1-201ENST00000609552 612 ntBASIC22.88■■□□□ 1.25
HMGB1P09429 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
HMGB1P09429 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.88■■□□□ 1.25
HMGB1P09429 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.88■■□□□ 1.25
HMGB1P09429 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.88■■□□□ 1.25
HMGB1P09429 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGB1P09429 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC22.87■■□□□ 1.25
HMGB1P09429 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC22.87■■□□□ 1.25
HMGB1P09429 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.87■■□□□ 1.25
HMGB1P09429 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 AC018445.3-201ENST00000624177 1945 ntBASIC22.87■■□□□ 1.25
HMGB1P09429 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.87■■□□□ 1.25
HMGB1P09429 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC22.87■■□□□ 1.25
HMGB1P09429 AC128676.1-201ENST00000454392 318 ntBASIC22.87■■□□□ 1.25
HMGB1P09429 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 MIR4651-201ENST00000582622 73 ntBASIC22.87■■□□□ 1.25
HMGB1P09429 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 SDHAP1-207ENST00000440850 2000 ntBASIC22.87■■□□□ 1.25
HMGB1P09429 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.87■■□□□ 1.25
HMGB1P09429 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.87■■□□□ 1.25
HMGB1P09429 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC22.87■■□□□ 1.25
HMGB1P09429 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
HMGB1P09429 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGB1P09429 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.86■■□□□ 1.25
HMGB1P09429 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC22.86■■□□□ 1.25
HMGB1P09429 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
HMGB1P09429 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.86■■□□□ 1.25
HMGB1P09429 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.86■■□□□ 1.25
HMGB1P09429 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC22.86■■□□□ 1.25
HMGB1P09429 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC22.86■■□□□ 1.25
HMGB1P09429 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.86■■□□□ 1.25
HMGB1P09429 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC22.86■■□□□ 1.25
HMGB1P09429 AC110285.5-201ENST00000611501 352 ntBASIC22.86■■□□□ 1.25
HMGB1P09429 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
HMGB1P09429 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC22.86■■□□□ 1.25
HMGB1P09429 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.86■■□□□ 1.25
HMGB1P09429 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.86■■□□□ 1.25
HMGB1P09429 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGB1P09429 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.85■■□□□ 1.25
HMGB1P09429 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC22.85■■□□□ 1.25
HMGB1P09429 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC22.85■■□□□ 1.25
HMGB1P09429 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
HMGB1P09429 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
HMGB1P09429 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC22.85■■□□□ 1.25
HMGB1P09429 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
HMGB1P09429 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
HMGB1P09429 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.85■■□□□ 1.25
HMGB1P09429 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC22.85■■□□□ 1.25
HMGB1P09429 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGB1P09429 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGB1P09429 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
HMGB1P09429 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGB1P09429 TEX21P-204ENST00000641479 1693 ntBASIC22.84■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms