Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.95■□□□□ 0.62
SDC3O75056 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SDC3O75056 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SDC3O75056 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.95■□□□□ 0.62
SDC3O75056 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 AL138966.2-201ENST00000621997 464 ntBASIC18.95■□□□□ 0.62
SDC3O75056 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.95■□□□□ 0.62
SDC3O75056 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.95■□□□□ 0.62
SDC3O75056 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SDC3O75056 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SDC3O75056 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SDC3O75056 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SDC3O75056 AL512408.1-201ENST00000569378 2000 ntBASIC18.95■□□□□ 0.62
SDC3O75056 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 YBX1P2-201ENST00000489612 999 ntBASIC18.94■□□□□ 0.62
SDC3O75056 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.94■□□□□ 0.62
SDC3O75056 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.94■□□□□ 0.62
SDC3O75056 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.94■□□□□ 0.62
SDC3O75056 LINC01238-205ENST00000567549 1107 ntBASIC18.94■□□□□ 0.62
SDC3O75056 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SDC3O75056 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
SDC3O75056 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
SDC3O75056 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SDC3O75056 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SDC3O75056 AL691432.2-201ENST00000607222 2038 ntBASIC18.93■□□□□ 0.62
SDC3O75056 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SDC3O75056 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.93■□□□□ 0.62
SDC3O75056 AC092338.2-201ENST00000568827 1415 ntBASIC18.93■□□□□ 0.62
SDC3O75056 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 RNF152P1-201ENST00000397754 604 ntBASIC18.93■□□□□ 0.62
SDC3O75056 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.93■□□□□ 0.62
SDC3O75056 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.93■□□□□ 0.62
SDC3O75056 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.93■□□□□ 0.62
SDC3O75056 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 AL358472.4-201ENST00000633140 710 ntBASIC18.93■□□□□ 0.62
SDC3O75056 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
SDC3O75056 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SDC3O75056 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SDC3O75056 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SDC3O75056 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.92■□□□□ 0.62
SDC3O75056 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 AC092647.4-201ENST00000457211 535 ntBASIC18.92■□□□□ 0.62
SDC3O75056 COX11P1-201ENST00000489116 835 ntBASIC18.92■□□□□ 0.62
SDC3O75056 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.92■□□□□ 0.62
SDC3O75056 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 AC010653.2-201ENST00000623505 997 ntBASIC18.92■□□□□ 0.62
SDC3O75056 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.92■□□□□ 0.62
SDC3O75056 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDC3O75056 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms