Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGN4O00479 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGN4O00479 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGN4O00479 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HMGN4O00479 UNC93B4-201ENST00000505679 747 ntBASIC18.04■□□□□ 0.48
HMGN4O00479 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.04■□□□□ 0.48
HMGN4O00479 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HMGN4O00479 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HMGN4O00479 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGN4O00479 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.04■□□□□ 0.48
HMGN4O00479 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGN4O00479 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGN4O00479 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HMGN4O00479 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
HMGN4O00479 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGN4O00479 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGN4O00479 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HMGN4O00479 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGN4O00479 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGN4O00479 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGN4O00479 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGN4O00479 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGN4O00479 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGN4O00479 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
HMGN4O00479 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HMGN4O00479 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGN4O00479 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGN4O00479 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGN4O00479 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
HMGN4O00479 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HMGN4O00479 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
HMGN4O00479 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HMGN4O00479 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGN4O00479 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGN4O00479 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGN4O00479 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.02■□□□□ 0.47
HMGN4O00479 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.02■□□□□ 0.47
HMGN4O00479 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.02■□□□□ 0.47
HMGN4O00479 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
HMGN4O00479 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HMGN4O00479 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HMGN4O00479 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGN4O00479 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 AL355802.2-201ENST00000402069 882 ntBASIC18.01■□□□□ 0.47
HMGN4O00479 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGN4O00479 TUBB8P6-201ENST00000436895 1288 ntBASIC18.01■□□□□ 0.47
HMGN4O00479 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGN4O00479 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGN4O00479 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGN4O00479 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
HMGN4O00479 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGN4O00479 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGN4O00479 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HMGN4O00479 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18■□□□□ 0.47
HMGN4O00479 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18■□□□□ 0.47
HMGN4O00479 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18■□□□□ 0.47
HMGN4O00479 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
HMGN4O00479 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HMGN4O00479 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms