Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 NUS1P2-201ENST00000417358 873 ntBASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 MED15P5-201ENST00000423150 992 ntBASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 MIR7706-201ENST00000613747 67 ntBASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC85CA6NKD9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 PAWRP1-201ENST00000451083 565 ntBASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 AC011467.4-201ENST00000594891 528 ntBASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 AC079602.3-201ENST00000623931 403 ntBASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC85CA6NKD9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 MIR662-201ENST00000384847 95 ntBASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 NMU-202ENST00000505262 693 ntTSL 3 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 AL160286.2-201ENST00000567150 934 ntBASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC85CA6NKD9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 AC090616.6-201ENST00000582640 721 ntBASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 FAM197Y3-203ENST00000618346 717 ntBASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 AC104109.2-201ENST00000602919 1418 ntBASIC21.52■■□□□ 1.04
CCDC85CA6NKD9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC85CA6NKD9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC85CA6NKD9 AL596442.2-201ENST00000610240 980 ntBASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms