Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC022031.1-201ENST00000585985 2593 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 MTND5P11-201ENST00000511037 1812 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RNU1-94P-201ENST00000362627 173 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 MIR129-1-201ENST00000384972 72 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AL121834.1-202ENST00000404494 277 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RPL31P52-201ENST00000407532 367 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RPL7AP25-201ENST00000423357 805 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RPEP3-201ENST00000425462 676 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 CNOT7P1-201ENST00000429006 852 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC074367.1-201ENST00000438685 1125 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RPS27P5-201ENST00000444247 244 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC009220.1-201ENST00000451614 275 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 EIF2S2P5-201ENST00000457635 968 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 snoU13.1-201ENST00000459157 104 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AL161747.1-201ENST00000480068 358 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC104687.1-201ENST00000485829 412 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC108022.1-201ENST00000493466 478 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 GSTP1P1-201ENST00000548078 319 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AL136520.1-202ENST00000555494 763 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC084783.1-201ENST00000565846 910 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC093765.1-201ENST00000603758 881 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AC009704.2-201ENST00000618739 483 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 RNF6P1-201ENST00000444889 1784 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 AL512283.1-201ENST00000606756 1384 ntBASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
ATG4BQ9Y4P1 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 MIR141-201ENST00000384975 95 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 RN7SKP167-201ENST00000411047 285 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 UBE2V1P11-201ENST00000411559 285 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC016397.1-201ENST00000412463 242 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 LINC01881-201ENST00000416103 412 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC062016.2-201ENST00000420950 676 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 CENPIP1-201ENST00000425713 902 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 RPL23AP1-201ENST00000428990 471 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 RPL23AP25-201ENST00000430973 463 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 CDY14P-201ENST00000431260 1014 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 CDY12P-201ENST00000440679 1015 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 CDY13P-201ENST00000445813 1015 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 EEF1A1P1-201ENST00000447052 739 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 CDY23P-201ENST00000451661 1014 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC010683.1-201ENST00000473673 378 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 OR51K1P-201ENST00000510214 950 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AP000827.1-201ENST00000527814 258 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AP003049.1-201ENST00000529418 457 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 RPL21P7-201ENST00000557463 483 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 MIR4715-201ENST00000584117 79 ntBASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.23□□□□□ -1.73
ATG4BQ9Y4P1 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms