Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 SNORA48.5-201ENST00000391143 135 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 AL158156.1-201ENST00000422509 473 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 FABP3P2-201ENST00000453169 399 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC017015.1-201ENST00000477387 286 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC008759.1-201ENST00000589783 983 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AL356489.2-201ENST00000566968 3528 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 MAPK10-303ENST00000641324 3959 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AP001642.1-201ENST00000624727 2117 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC020656.2-201ENST00000613291 5309 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 BMS1P3-201ENST00000372011 932 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AL645931.1-201ENST00000439737 410 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 SUN3-208ENST00000453192 801 ntTSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 AC116312.1-201ENST00000606841 314 ntBASIC2.55□□□□□ -2
VPS13DQ5THJ4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC2.55□□□□□ -2
VPS13DQ5THJ4 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS13DQ5THJ4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 RNA5SP97-201ENST00000365006 84 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC011742.1-201ENST00000431448 434 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 MIR199A2-201ENST00000385289 110 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 MTND6P5-201ENST00000448266 512 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 RN7SKP46-201ENST00000515942 234 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC016839.1-201ENST00000578162 867 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AL033523.1-201ENST00000605153 153 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC128687.2-201ENST00000609657 566 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC015871.5-202ENST00000623252 701 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC006484.1-201ENST00000435086 1884 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 RNA5SP51-201ENST00000364750 119 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 RN7SKP284-201ENST00000411002 343 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC245054.1-201ENST00000420944 258 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 RPL21P110-201ENST00000433345 446 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 RPL23AP89-201ENST00000439324 255 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 RPS3AP46-201ENST00000448352 682 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 MIR5680-201ENST00000577577 84 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 AL390816.3-201ENST00000604527 1066 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC2.54□□□□□ -2
VPS13DQ5THJ4 RPL6P9-201ENST00000466502 859 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 CDH12P2-201ENST00000504393 298 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13DQ5THJ4 RPL21P7-201ENST00000557463 483 ntBASIC2.54□□□□□ -2
VPS13DQ5THJ4 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms