Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.55□□□□□ -1.68
MSH3P20585 uc_338.18-201ENST00000615451 175 ntBASIC4.55□□□□□ -1.68
MSH3P20585 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.55□□□□□ -1.68
MSH3P20585 AC005086.4-201ENST00000623065 213 ntBASIC4.55□□□□□ -1.68
MSH3P20585 AP002967.1-201ENST00000624203 539 ntBASIC4.55□□□□□ -1.68
MSH3P20585 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.55□□□□□ -1.68
MSH3P20585 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.55□□□□□ -1.68
MSH3P20585 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.55□□□□□ -1.68
MSH3P20585 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
MSH3P20585 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSH3P20585 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
MSH3P20585 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
MSH3P20585 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
MSH3P20585 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.55□□□□□ -1.68
MSH3P20585 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.55□□□□□ -1.68
MSH3P20585 VN2R3P-201ENST00000422626 1412 ntBASIC4.55□□□□□ -1.68
MSH3P20585 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
MSH3P20585 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
MSH3P20585 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
MSH3P20585 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH3P20585 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH3P20585 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH3P20585 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.54□□□□□ -1.68
MSH3P20585 OR52B1P-201ENST00000316506 909 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AC079741.1-201ENST00000321498 212 ntBASIC4.54□□□□□ -1.68
MSH3P20585 SNORD113.2-201ENST00000364166 89 ntBASIC4.54□□□□□ -1.68
MSH3P20585 MIR195-201ENST00000385194 87 ntBASIC4.54□□□□□ -1.68
MSH3P20585 CYB5AP4-201ENST00000396692 399 ntBASIC4.54□□□□□ -1.68
MSH3P20585 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
MSH3P20585 SNORA11B-201ENST00000408175 129 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSH3P20585 AC119751.6-201ENST00000416712 186 ntBASIC4.54□□□□□ -1.68
MSH3P20585 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.54□□□□□ -1.68
MSH3P20585 AC115285.1-201ENST00000424879 736 ntBASIC4.54□□□□□ -1.68
MSH3P20585 RPL21P43-201ENST00000425440 472 ntBASIC4.54□□□□□ -1.68
MSH3P20585 RPS12P10-201ENST00000427031 377 ntBASIC4.54□□□□□ -1.68
MSH3P20585 USP12PY-201ENST00000427677 1064 ntBASIC4.54□□□□□ -1.68
MSH3P20585 RPS7P2-201ENST00000435134 607 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.54□□□□□ -1.68
MSH3P20585 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH3P20585 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH3P20585 ARL2BPP10-201ENST00000446487 531 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH3P20585 DUXAP8-207ENST00000456786 622 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH3P20585 AC008897.1-201ENST00000494006 347 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.54□□□□□ -1.68
MSH3P20585 AC096571.1-202ENST00000506634 735 ntBASIC4.54□□□□□ -1.68
MSH3P20585 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.54□□□□□ -1.68
MSH3P20585 SNORA31.13-201ENST00000516624 135 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.54□□□□□ -1.68
MSH3P20585 AC021451.1-201ENST00000523498 1129 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.54□□□□□ -1.68
MSH3P20585 AL049870.4-201ENST00000555741 486 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH3P20585 RN7SL176P-201ENST00000580352 264 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AP000919.1-202ENST00000581139 1264 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AC209154.1-201ENST00000582156 337 ntBASIC4.54□□□□□ -1.68
MSH3P20585 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH3P20585 AL606834.3-201ENST00000602615 496 ntBASIC4.54□□□□□ -1.68
MSH3P20585 AP002802.2-201ENST00000605877 235 ntBASIC4.54□□□□□ -1.68
MSH3P20585 DUXAP10-204ENST00000612052 616 ntBASIC4.54□□□□□ -1.68
MSH3P20585 LINC00901.1-201ENST00000617252 152 ntBASIC4.54□□□□□ -1.68
MSH3P20585 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH3P20585 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH3P20585 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH3P20585 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.54□□□□□ -1.68
MSH3P20585 HSPD1P11-201ENST00000508643 1702 ntBASIC4.54□□□□□ -1.68
MSH3P20585 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH3P20585 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSH3P20585 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.54□□□□□ -1.68
MSH3P20585 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
MSH3P20585 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH3P20585 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
MSH3P20585 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
MSH3P20585 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.54□□□□□ -1.68
MSH3P20585 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 AL450326.2-201ENST00000421913 1962 ntBASIC4.53□□□□□ -1.68
MSH3P20585 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 KARSP3-201ENST00000571212 1504 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC087190.4-201ENST00000574616 8334 ntBASIC4.53□□□□□ -1.68
MSH3P20585 OR4K15-201ENST00000305051 1216 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC021146.4-201ENST00000309229 279 ntBASIC4.53□□□□□ -1.68
MSH3P20585 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 RNU1-94P-201ENST00000362627 173 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RNU5B-4P-201ENST00000363508 111 ntBASIC4.53□□□□□ -1.68
MSH3P20585 MIR192-201ENST00000384915 110 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RNA5SP372-201ENST00000390836 115 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RNU6-298P-201ENST00000390888 96 ntBASIC4.53□□□□□ -1.68
MSH3P20585 SDHCP2-201ENST00000398565 501 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC004448.2-201ENST00000422360 586 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms