Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 AL121839.2-201ENST00000565058 6943 ntBASIC4.81□□□□□ -1.64
NUP98P52948 MIR490-201ENST00000384865 128 ntBASIC4.81□□□□□ -1.64
NUP98P52948 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP98P52948 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.81□□□□□ -1.64
NUP98P52948 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.81□□□□□ -1.64
NUP98P52948 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP98P52948 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
NUP98P52948 AC067931.1-201ENST00000624190 671 ntBASIC4.81□□□□□ -1.64
NUP98P52948 AL773545.4-201ENST00000637262 310 ntBASIC4.81□□□□□ -1.64
NUP98P52948 AL513478.4-201ENST00000641636 310 ntBASIC4.81□□□□□ -1.64
NUP98P52948 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.81□□□□□ -1.64
NUP98P52948 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
NUP98P52948 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP98P52948 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP98P52948 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP98P52948 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP98P52948 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP98P52948 SNORA3C-201ENST00000408792 125 ntBASIC4.8□□□□□ -1.64
NUP98P52948 NPM1P25-201ENST00000429734 854 ntBASIC4.8□□□□□ -1.64
NUP98P52948 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP98P52948 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP98P52948 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP98P52948 AL133162.1-201ENST00000463228 453 ntBASIC4.8□□□□□ -1.64
NUP98P52948 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP98P52948 AC006511.1-201ENST00000470614 315 ntBASIC4.8□□□□□ -1.64
NUP98P52948 RPL7P49-201ENST00000471402 708 ntBASIC4.8□□□□□ -1.64
NUP98P52948 RN7SKP13-201ENST00000515933 244 ntBASIC4.8□□□□□ -1.64
NUP98P52948 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP98P52948 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP98P52948 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP98P52948 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP98P52948 SRGNP1-201ENST00000603392 451 ntBASIC4.8□□□□□ -1.64
NUP98P52948 AC012468.1-201ENST00000604888 430 ntBASIC4.8□□□□□ -1.64
NUP98P52948 AC243312.2-201ENST00000623340 601 ntBASIC4.8□□□□□ -1.64
NUP98P52948 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP98P52948 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP98P52948 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP98P52948 AL356274.2-201ENST00000624379 3752 ntBASIC4.79□□□□□ -1.64
NUP98P52948 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
NUP98P52948 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
NUP98P52948 RNU2-65P-201ENST00000410162 185 ntBASIC4.79□□□□□ -1.64
NUP98P52948 SETP9-201ENST00000423837 832 ntBASIC4.79□□□□□ -1.64
NUP98P52948 NPM1P34-201ENST00000428821 893 ntBASIC4.79□□□□□ -1.64
NUP98P52948 MAPRE1P3-201ENST00000435438 796 ntBASIC4.79□□□□□ -1.64
NUP98P52948 HSPD1P21-201ENST00000436541 245 ntBASIC4.79□□□□□ -1.64
NUP98P52948 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 PPBPP1-201ENST00000510807 373 ntBASIC4.79□□□□□ -1.64
NUP98P52948 AC074250.1-201ENST00000511117 192 ntBASIC4.79□□□□□ -1.64
NUP98P52948 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP98P52948 AC068020.1-201ENST00000594215 661 ntBASIC4.79□□□□□ -1.64
NUP98P52948 AL121890.2-201ENST00000617644 465 ntBASIC4.79□□□□□ -1.64
NUP98P52948 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
NUP98P52948 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
NUP98P52948 LINC00561-201ENST00000565815 2738 ntBASIC4.79□□□□□ -1.64
NUP98P52948 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 AC074029.4-201ENST00000624796 1859 ntBASIC4.79□□□□□ -1.64
NUP98P52948 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 MIR200C-201ENST00000384980 68 ntBASIC4.79□□□□□ -1.64
NUP98P52948 AC104978.1-201ENST00000449387 391 ntBASIC4.79□□□□□ -1.64
NUP98P52948 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP98P52948 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP98P52948 AC068993.1-201ENST00000546724 589 ntBASIC4.79□□□□□ -1.64
NUP98P52948 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
NUP98P52948 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP98P52948 AC096553.1-201ENST00000605169 829 ntBASIC4.79□□□□□ -1.64
NUP98P52948 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NUP98P52948 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
NUP98P52948 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP98P52948 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
NUP98P52948 MTND2P15-201ENST00000418575 892 ntBASIC4.78□□□□□ -1.64
NUP98P52948 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP98P52948 AL591419.1-201ENST00000427423 339 ntBASIC4.78□□□□□ -1.64
NUP98P52948 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.78□□□□□ -1.64
NUP98P52948 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.78□□□□□ -1.64
NUP98P52948 PPIAP3-201ENST00000450588 505 ntBASIC4.78□□□□□ -1.64
NUP98P52948 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.78□□□□□ -1.64
NUP98P52948 RN7SL293P-201ENST00000481765 281 ntBASIC4.78□□□□□ -1.64
NUP98P52948 AC005726.1-201ENST00000494679 427 ntBASIC4.78□□□□□ -1.64
NUP98P52948 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP98P52948 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.78□□□□□ -1.64
NUP98P52948 GNRHR2P1-201ENST00000555315 631 ntBASIC4.78□□□□□ -1.64
NUP98P52948 AC243654.2-201ENST00000612843 443 ntBASIC4.78□□□□□ -1.64
NUP98P52948 AC119674.1-207ENST00000641355 633 ntBASIC4.78□□□□□ -1.64
NUP98P52948 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP98P52948 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NUP98P52948 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NUP98P52948 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NUP98P52948 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.78□□□□□ -1.64
NUP98P52948 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NUP98P52948 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms