Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 AC091305.2-201ENST00000624049 1576 ntBASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIMD1Q9UGP4 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AL355377.1-201ENST00000621125 1653 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 SPATA31C2-201ENST00000324915 3777 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 SNORD116-29-201ENST00000384516 83 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 Y_RNA.530-201ENST00000384587 101 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RNU6-1105P-201ENST00000384774 107 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RNA5SP431-201ENST00000410312 120 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 METTL15P3-201ENST00000415522 1221 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 ATP5A1P8-201ENST00000423669 1291 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC003989.1-201ENST00000434569 565 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 HMGN1P2-201ENST00000445197 310 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RPL23AP11-201ENST00000475260 469 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RPL21P6-201ENST00000479171 504 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RN7SL88P-201ENST00000480166 299 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RN7SL797P-201ENST00000486314 297 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 CDV3-208ENST00000511392 554 ntTSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 OLR1-209ENST00000543993 822 ntTSL 2 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC018552.3-201ENST00000567416 561 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RN7SL366P-201ENST00000577957 292 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC104184.1-201ENST00000607513 721 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AP005212.3-201ENST00000619964 528 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC130448.2-201ENST00000624082 374 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 CYP3A51P-201ENST00000633513 256 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AL133216.2-202ENST00000634512 349 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 MTND4LP32-201ENST00000636111 270 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 AC004972.1-201ENST00000623934 2209 ntBASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIMD1Q9UGP4 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AP001350.1-201ENST00000601906 1524 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 HSPA8P11-201ENST00000508840 1898 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 GMFG-201ENST00000253054 616 ntTSL 5 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 RNA5SP140-201ENST00000364524 92 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 MTCYBP4-201ENST00000401524 249 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 RN7SKP235-201ENST00000410662 305 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 NMD3P2-201ENST00000421815 761 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AL358176.2-201ENST00000425769 204 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 Y_RNA.665-201ENST00000516177 98 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC011979.2-201ENST00000527568 352 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC007537.1-201ENST00000539347 327 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC006512.2-201ENST00000543250 486 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 EEF1A1P17-201ENST00000547505 1275 ntBASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC7.18□□□□□ -1.26
LIMD1Q9UGP4 AL022099.1-201ENST00000604551 712 ntBASIC7.18□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms