Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 IGKV2-36-201ENST00000519999 223 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 BRD9P1-201ENST00000529855 560 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 NTAN1P1-201ENST00000603150 646 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC009220.3-201ENST00000604318 586 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC004223.4-201ENST00000612426 332 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 HSPA8P17-201ENST00000427029 1382 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC004076.2-201ENST00000620532 3323 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 INTS6P1-201ENST00000504674 2530 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL390862.1-201ENST00000635467 1469 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL391994.1-201ENST00000254724 282 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 RNU6-839P-201ENST00000363347 108 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 U3.23-201ENST00000391132 200 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 RNU2-6P-201ENST00000411404 190 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC019178.2-201ENST00000423595 505 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 Z93242.1-201ENST00000427102 353 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC073069.1-201ENST00000428657 441 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL035407.1-201ENST00000429211 571 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 NDUFB4P8-201ENST00000435351 367 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL031663.1-201ENST00000437445 219 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC016772.1-201ENST00000444170 1261 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 RPS27P23-201ENST00000487608 251 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 RNU6-1225P-201ENST00000516336 65 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 RN7SKP260-201ENST00000516907 149 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 MIR4480-201ENST00000582492 71 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL137072.1-201ENST00000603444 466 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL162431.4-201ENST00000604674 411 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL592221.1-201ENST00000605266 382 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC097505.1-201ENST00000610199 565 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC069209.1-201ENST00000619282 651 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AF246928.1-201ENST00000623768 87 ntBASIC5.41□□□□□ -1.54
TDP1Q9NUW8 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC5.41□□□□□ -1.54
TDP1Q9NUW8 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms