Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USP41Q3LFD5 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.98□□□□□ -1.61
USP41Q3LFD5 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP41Q3LFD5 AL136164.3-201ENST00000624429 3978 ntBASIC4.98□□□□□ -1.61
USP41Q3LFD5 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USP41Q3LFD5 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
USP41Q3LFD5 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
USP41Q3LFD5 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
USP41Q3LFD5 RAD17P1-201ENST00000418130 2042 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 HSPA8P17-201ENST00000427029 1382 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC234772.1-201ENST00000377927 937 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 RNU6-185P-201ENST00000384421 107 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 RNU4-25P-201ENST00000410569 230 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC241520.1-201ENST00000422654 1099 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AP000936.3-201ENST00000438127 255 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AL096803.2-201ENST00000450032 677 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AL672167.3-201ENST00000465951 960 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 SUMO2P5-201ENST00000506790 245 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC069306.1-201ENST00000507006 843 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC007016.1-201ENST00000512110 244 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 RPS27AP18-201ENST00000515536 459 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 RN7SKP122-201ENST00000515923 296 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 HMGB1P19-201ENST00000517578 577 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC005868.1-201ENST00000536421 331 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC008083.2-201ENST00000546707 476 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC010735.1-201ENST00000567305 1026 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 AL590392.1-201ENST00000604960 446 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 MLECP1-201ENST00000615893 709 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC023510.2-201ENST00000622162 746 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AP003485.1-201ENST00000625093 753 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 AC006927.2-201ENST00000639256 389 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.97□□□□□ -1.61
USP41Q3LFD5 DDX18P5-201ENST00000534547 1306 ntBASIC4.97□□□□□ -1.61
USP41Q3LFD5 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP41Q3LFD5 CCT8P1-201ENST00000413611 1657 ntBASIC4.96□□□□□ -1.61
USP41Q3LFD5 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP41Q3LFD5 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP41Q3LFD5 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 FAM3C2-201ENST00000312214 681 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 FABP5P3-201ENST00000437960 408 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC044797.1-201ENST00000445744 679 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AL035551.1-201ENST00000446931 348 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AL591623.2-201ENST00000449978 222 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC090686.1-201ENST00000481577 749 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 PRELID3BP6-201ENST00000503839 571 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC025674.1-201ENST00000507074 324 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC015795.1-201ENST00000513669 327 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP41Q3LFD5 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 FKBP1BP1-201ENST00000553366 325 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 ATP5J2P6-201ENST00000565203 266 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC115286.1-201ENST00000604298 434 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC027449.1-201ENST00000608890 407 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 AC009704.2-201ENST00000618739 483 ntBASIC4.96□□□□□ -1.62
USP41Q3LFD5 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.96□□□□□ -1.62
USP41Q3LFD5 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms