Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AL138895.2-201ENST00000603019 178 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 DUXAP4-201ENST00000603046 613 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 C8orf59P2-201ENST00000603441 271 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AL390208.1-201ENST00000605885 644 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AL158211.4-201ENST00000606988 584 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 AC136475.10-201ENST00000620253 385 ntBASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD1Q96NR3 LINC00561-201ENST00000565815 2738 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 OR10R3P-201ENST00000361688 942 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 MIR137-201ENST00000385223 102 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 RNU6-876P-201ENST00000391295 104 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AL512422.1-201ENST00000407033 553 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 SNRPEP6-201ENST00000407465 277 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC073069.1-201ENST00000428657 441 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 ZYG11AP1-201ENST00000430329 837 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 DPPA3P1-201ENST00000448050 469 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC005077.1-201ENST00000449226 375 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 CFL1P4-201ENST00000451536 498 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 VDAC2P4-201ENST00000452925 711 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC114981.1-201ENST00000503897 678 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 RNA5SP340-201ENST00000517132 107 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AP005119.1-201ENST00000580956 292 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC063977.5-201ENST00000601044 974 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC112191.3-201ENST00000604371 277 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AL365503.1-201ENST00000605247 905 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 MIR6778-201ENST00000617912 73 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC007742.2-201ENST00000618226 398 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AL359880.1-201ENST00000621879 266 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 AC007342.5-201ENST00000571340 2142 ntBASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD1Q96NR3 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 AC083837.1-201ENST00000565297 2994 ntBASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD1Q96NR3 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms