Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
NUP98P52948 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
NUP98P52948 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 SNORA3.3-201ENST00000408712 125 ntBASIC4.87□□□□□ -1.63
NUP98P52948 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP98P52948 AC005008.1-201ENST00000456151 612 ntBASIC4.87□□□□□ -1.63
NUP98P52948 HMGN1P15-201ENST00000513870 295 ntBASIC4.87□□□□□ -1.63
NUP98P52948 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP98P52948 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP98P52948 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP98P52948 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
NUP98P52948 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
NUP98P52948 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP98P52948 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP98P52948 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP98P52948 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP98P52948 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
NUP98P52948 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 SYF2P2-201ENST00000417620 583 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP98P52948 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.86□□□□□ -1.63
NUP98P52948 UBDP1-202ENST00000457888 382 ntBASIC4.86□□□□□ -1.63
NUP98P52948 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 AC104619.4-201ENST00000510773 249 ntBASIC4.86□□□□□ -1.63
NUP98P52948 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP98P52948 RN7SKP18-201ENST00000516005 275 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.86□□□□□ -1.63
NUP98P52948 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP98P52948 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP98P52948 AL137849.1-201ENST00000604767 169 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP98P52948 PCA3_2.1-201ENST00000612507 409 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AC016957.2-201ENST00000616998 848 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AL591424.2-201ENST00000617023 128 ntBASIC4.86□□□□□ -1.63
NUP98P52948 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
NUP98P52948 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 AP004289.2-201ENST00000444413 1457 ntBASIC4.86□□□□□ -1.63
NUP98P52948 NCOA4P2-201ENST00000340589 1813 ntBASIC4.86□□□□□ -1.63
NUP98P52948 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
NUP98P52948 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP98P52948 SNORA9-201ENST00000384215 133 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AP000907.1-201ENST00000428428 510 ntBASIC4.86□□□□□ -1.63
NUP98P52948 RPL7P4-203ENST00000430239 730 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AL159987.2-201ENST00000432754 307 ntBASIC4.86□□□□□ -1.63
NUP98P52948 ARL4AP3-201ENST00000441452 574 ntBASIC4.86□□□□□ -1.63
NUP98P52948 RPS26P28-201ENST00000470806 348 ntBASIC4.86□□□□□ -1.63
NUP98P52948 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP98P52948 AC021146.3-201ENST00000511911 260 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AC007066.2-202ENST00000566531 914 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.86□□□□□ -1.63
NUP98P52948 RN7SL339P-201ENST00000580597 296 ntBASIC4.86□□□□□ -1.63
NUP98P52948 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP98P52948 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NUP98P52948 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
NUP98P52948 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 MIR7-3-201ENST00000384898 110 ntBASIC4.85□□□□□ -1.63
NUP98P52948 MIR183-201ENST00000384958 110 ntBASIC4.85□□□□□ -1.63
NUP98P52948 MIR199A2-201ENST00000385289 110 ntBASIC4.85□□□□□ -1.63
NUP98P52948 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.85□□□□□ -1.63
NUP98P52948 AC245052.5-201ENST00000416320 649 ntBASIC4.85□□□□□ -1.63
NUP98P52948 AL390879.2-203ENST00000426943 1121 ntBASIC4.85□□□□□ -1.63
NUP98P52948 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NUP98P52948 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.85□□□□□ -1.63
NUP98P52948 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
NUP98P52948 AC106707.2-201ENST00000484182 374 ntBASIC4.85□□□□□ -1.63
NUP98P52948 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.85□□□□□ -1.63
NUP98P52948 CDH12P2-201ENST00000504393 298 ntBASIC4.85□□□□□ -1.63
NUP98P52948 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.85□□□□□ -1.63
NUP98P52948 OR8I1P-201ENST00000529291 931 ntBASIC4.85□□□□□ -1.63
NUP98P52948 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.85□□□□□ -1.63
NUP98P52948 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.85□□□□□ -1.63
NUP98P52948 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.85□□□□□ -1.63
NUP98P52948 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.85□□□□□ -1.63
NUP98P52948 U3.45-201ENST00000607547 219 ntBASIC4.85□□□□□ -1.63
NUP98P52948 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
NUP98P52948 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms