Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL4A5P29400 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A5P29400 AC083899.2-201ENST00000423285 1376 ntBASIC4.69□□□□□ -1.66
COL4A5P29400 AP001284.1-201ENST00000528393 2118 ntBASIC4.69□□□□□ -1.66
COL4A5P29400 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A5P29400 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
COL4A5P29400 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 Y_RNA.111-201ENST00000363248 100 ntBASIC4.68□□□□□ -1.66
COL4A5P29400 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.68□□□□□ -1.66
COL4A5P29400 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.68□□□□□ -1.66
COL4A5P29400 RPL23AP89-201ENST00000439324 255 ntBASIC4.68□□□□□ -1.66
COL4A5P29400 RPL21P23-201ENST00000446654 460 ntBASIC4.68□□□□□ -1.66
COL4A5P29400 AC108022.1-201ENST00000493466 478 ntBASIC4.68□□□□□ -1.66
COL4A5P29400 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A5P29400 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.68□□□□□ -1.66
COL4A5P29400 AC015871.5-202ENST00000623252 701 ntBASIC4.68□□□□□ -1.66
COL4A5P29400 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
COL4A5P29400 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A5P29400 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
COL4A5P29400 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL4A5P29400 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A5P29400 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 Z82217.1-201ENST00000625157 8149 ntBASIC4.68□□□□□ -1.66
COL4A5P29400 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.68□□□□□ -1.66
COL4A5P29400 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A5P29400 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A5P29400 AC067945.1-201ENST00000342609 618 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 AL122016.1-201ENST00000403365 367 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.67□□□□□ -1.66
COL4A5P29400 AC096664.2-201ENST00000411843 406 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 SKP1P3-201ENST00000429280 487 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A5P29400 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A5P29400 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A5P29400 AC022695.1-201ENST00000522089 237 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A5P29400 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A5P29400 AL137849.1-201ENST00000604767 169 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A5P29400 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A5P29400 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL4A5P29400 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A5P29400 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A5P29400 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL4A5P29400 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A5P29400 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A5P29400 VDAC1P9-201ENST00000412766 841 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A5P29400 AL391219.1-201ENST00000422570 483 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC4.67□□□□□ -1.66
COL4A5P29400 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A5P29400 RPS3AP46-201ENST00000448352 682 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 RPS17P13-201ENST00000448974 407 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 APOOP2-201ENST00000461561 539 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 RPL6P9-201ENST00000466502 859 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A5P29400 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A5P29400 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.67□□□□□ -1.66
COL4A5P29400 RNU1-103P-201ENST00000516502 125 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A5P29400 RPL21P12-201ENST00000559810 515 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A5P29400 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.67□□□□□ -1.66
COL4A5P29400 AC243312.2-201ENST00000623340 601 ntBASIC4.67□□□□□ -1.66
COL4A5P29400 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A5P29400 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A5P29400 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.66□□□□□ -1.66
COL4A5P29400 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A5P29400 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A5P29400 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL4A5P29400 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.66□□□□□ -1.66
COL4A5P29400 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A5P29400 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.66□□□□□ -1.66
COL4A5P29400 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A5P29400 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A5P29400 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A5P29400 HIGD1AP4-201ENST00000430194 280 ntBASIC4.66□□□□□ -1.66
COL4A5P29400 RANP8-201ENST00000444720 713 ntBASIC4.66□□□□□ -1.66
COL4A5P29400 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.66□□□□□ -1.66
COL4A5P29400 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A5P29400 PPP1R11P1-201ENST00000486095 376 ntBASIC4.66□□□□□ -1.66
COL4A5P29400 RPL7P24-201ENST00000493052 752 ntBASIC4.66□□□□□ -1.66
COL4A5P29400 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A5P29400 RN7SKP57-201ENST00000517248 293 ntBASIC4.66□□□□□ -1.66
COL4A5P29400 AC138832.1-201ENST00000522871 556 ntBASIC4.66□□□□□ -1.66
COL4A5P29400 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A5P29400 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A5P29400 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A5P29400 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
COL4A5P29400 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.65□□□□□ -1.66
COL4A5P29400 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
COL4A5P29400 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.65□□□□□ -1.66
COL4A5P29400 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL4A5P29400 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms