Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 AC113194.1-201ENST00000606037 500 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AL391813.2-201ENST00000609113 322 ntBASIC6.4□□□□□ -1.38
MSX1P28360 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC6.4□□□□□ -1.38
MSX1P28360 TP53TG1_2.1-201ENST00000611226 182 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AC096861.1-201ENST00000616652 240 ntBASIC6.4□□□□□ -1.38
MSX1P28360 AL356274.1-201ENST00000617064 410 ntBASIC6.4□□□□□ -1.38
MSX1P28360 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.4□□□□□ -1.38
MSX1P28360 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
MSX1P28360 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
MSX1P28360 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.39
MSX1P28360 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
MSX1P28360 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
MSX1P28360 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX1P28360 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX1P28360 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 AC245100.2-201ENST00000454544 1679 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AC129502.1-201ENST00000623261 1654 ntBASIC6.39□□□□□ -1.39
MSX1P28360 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 MTND5P10-201ENST00000603719 1809 ntBASIC6.39□□□□□ -1.39
MSX1P28360 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX1P28360 AC005614.1-201ENST00000598952 3653 ntBASIC6.39□□□□□ -1.39
MSX1P28360 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 RNU6-744P-201ENST00000365557 107 ntBASIC6.39□□□□□ -1.39
MSX1P28360 RNU6-1316P-201ENST00000384242 108 ntBASIC6.39□□□□□ -1.39
MSX1P28360 U3.23-201ENST00000391132 200 ntBASIC6.39□□□□□ -1.39
MSX1P28360 MIR548K-201ENST00000408406 116 ntBASIC6.39□□□□□ -1.39
MSX1P28360 RN7SKP247-201ENST00000411094 308 ntBASIC6.39□□□□□ -1.39
MSX1P28360 RPL24P2-201ENST00000421023 475 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 AC006548.1-201ENST00000427470 102 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX1P28360 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX1P28360 IGKV1OR10-1-201ENST00000442306 329 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AL354714.5-201ENST00000450131 590 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AC022080.2-201ENST00000452932 533 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX1P28360 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX1P28360 IGKV1OR22-5-201ENST00000458718 354 ntBASIC6.39□□□□□ -1.39
MSX1P28360 RPL23AP8-201ENST00000479812 475 ntBASIC6.39□□□□□ -1.39
MSX1P28360 RPL29P23-201ENST00000486188 442 ntBASIC6.39□□□□□ -1.39
MSX1P28360 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 SUMO2P4-201ENST00000504193 276 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AC098591.2-201ENST00000510152 315 ntBASIC6.39□□□□□ -1.39
MSX1P28360 RNU4ATAC8P-201ENST00000516196 109 ntBASIC6.39□□□□□ -1.39
MSX1P28360 RNU6-864P-201ENST00000516256 108 ntBASIC6.39□□□□□ -1.39
MSX1P28360 SCARNA24.1-201ENST00000516465 137 ntBASIC6.39□□□□□ -1.39
MSX1P28360 IGLC4-201ENST00000517690 248 ntBASIC6.39□□□□□ -1.39
MSX1P28360 EEF1B2P2-201ENST00000519625 676 ntBASIC6.39□□□□□ -1.39
MSX1P28360 IGLVV-66-201ENST00000523818 341 ntBASIC6.39□□□□□ -1.39
MSX1P28360 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX1P28360 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX1P28360 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX1P28360 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC6.39□□□□□ -1.39
MSX1P28360 RN7SL66P-201ENST00000582099 264 ntBASIC6.39□□□□□ -1.39
MSX1P28360 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX1P28360 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 RPS27AP19-201ENST00000597285 458 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 BBIP1P1-201ENST00000602999 279 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AC008782.1-201ENST00000603386 430 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AC009779.8-202ENST00000607990 932 ntBASIC6.39□□□□□ -1.39
MSX1P28360 AC083806.3-201ENST00000614016 455 ntBASIC6.39□□□□□ -1.39
MSX1P28360 CR381572.1-201ENST00000625098 102 ntBASIC6.39□□□□□ -1.39
MSX1P28360 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
MSX1P28360 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.39□□□□□ -1.39
MSX1P28360 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.39□□□□□ -1.39
MSX1P28360 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
MSX1P28360 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSX1P28360 USP9YP4-201ENST00000424401 1745 ntBASIC6.39□□□□□ -1.39
MSX1P28360 OFD1P17-201ENST00000437639 3018 ntBASIC6.39□□□□□ -1.39
MSX1P28360 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 Y_RNA.135-201ENST00000363439 95 ntBASIC6.38□□□□□ -1.39
MSX1P28360 Y_RNA.176-201ENST00000363815 109 ntBASIC6.38□□□□□ -1.39
MSX1P28360 RNU6-853P-201ENST00000364306 107 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms