Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 RNA5SP498-201ENST00000411342 120 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AL353597.2-202ENST00000434901 373 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AL357520.1-201ENST00000441557 453 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 CYCSP42-201ENST00000450823 238 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AL162388.1-201ENST00000450912 352 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 VN1R32P-201ENST00000452234 905 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC005229.2-201ENST00000456995 399 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 MTND2P28-201ENST00000457540 1044 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 RNU6-1218P-201ENST00000458990 108 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 RN7SL459P-201ENST00000481078 302 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 HMGB1P46-201ENST00000520062 610 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 MTCO3P22-201ENST00000603219 784 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 KATNBL1P1-201ENST00000605192 748 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC140113.4-201ENST00000622087 222 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AC010435.1-201ENST00000623353 1177 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 OR2L1P-202ENST00000641567 1023 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 NXPH1-205ENST00000602349 1953 ntBASIC4.43□□□□□ -1.7
VPS35Q96QK1 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS35Q96QK1 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS35Q96QK1 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 RNU1-32P-201ENST00000363937 159 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 RNA5SP513-201ENST00000364648 118 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 RPS27AP11-201ENST00000402798 447 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 SNORA74C-2-201ENST00000411179 201 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 RNU6-603P-201ENST00000411403 107 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 RPL21P108-201ENST00000413857 481 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 YY1P1-201ENST00000427625 668 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 DNAJC19P7-201ENST00000428811 344 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC092013.1-201ENST00000438795 332 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 DDX6P1-205ENST00000441966 1436 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC092691.2-201ENST00000461787 803 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 RPL21P126-201ENST00000470049 478 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 CYCSP28-201ENST00000534284 321 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 GSTP1P1-201ENST00000548078 319 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC027455.1-201ENST00000574104 594 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC103792.1-201ENST00000603591 919 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC026979.4-201ENST00000606555 645 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC020634.1-201ENST00000608701 549 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AL136295.6-201ENST00000610486 658 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 AL035461.2-201ENST00000619201 524 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 MIR7641-1-201ENST00000627518 61 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AC055839.1-201ENST00000634467 498 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS35Q96QK1 EOGT-210ENST00000615922 1931 ntBASIC4.42□□□□□ -1.7
VPS35Q96QK1 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS35Q96QK1 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS35Q96QK1 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VPS35Q96QK1 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS35Q96QK1 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms