Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 PWAR1-201ENST00000624188 2414 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
USP39Q53GS9 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 RLIMP2-201ENST00000427891 1563 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 RNU6-797P-201ENST00000363101 109 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 RNU1-87P-201ENST00000363727 170 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 Y_RNA.303-201ENST00000364998 94 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 Y_RNA.359-201ENST00000365498 102 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USP39Q53GS9 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USP39Q53GS9 SNORA40.2-201ENST00000390847 128 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 VDAC2P1-201ENST00000399358 958 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 RNU2-17P-201ENST00000410290 190 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 ZNF863P-201ENST00000426746 417 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 RPS4XP16-201ENST00000427198 791 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 DSTNP5-201ENST00000427921 523 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AC006466.1-201ENST00000438721 289 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 CDC27P1-201ENST00000445384 715 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 RPL5P32-201ENST00000454085 879 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AL389915.2-201ENST00000454576 441 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 RNU6-956P-201ENST00000458868 103 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 MTCO3P38-201ENST00000468910 766 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.56□□□□□ -1.52
USP39Q53GS9 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 RNU6-319P-201ENST00000516025 108 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 DUXAP2-201ENST00000519198 589 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.56□□□□□ -1.52
USP39Q53GS9 HMGB1P40-201ENST00000525121 540 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 OR8Q1P-201ENST00000526467 655 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.56□□□□□ -1.52
USP39Q53GS9 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 ZNF519P3-201ENST00000557158 1032 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.56□□□□□ -1.52
USP39Q53GS9 CASC16-202ENST00000563844 610 ntTSL 3 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC5.56□□□□□ -1.52
USP39Q53GS9 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC006116.3-201ENST00000592968 361 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AP004372.1-201ENST00000604842 844 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AC096553.1-201ENST00000605169 829 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 AP001330.5-201ENST00000607176 411 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 MIR6820-201ENST00000611508 62 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 Z99129.1-201ENST00000612510 255 ntBASIC5.56□□□□□ -1.52
USP39Q53GS9 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP39Q53GS9 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
USP39Q53GS9 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
USP39Q53GS9 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP39Q53GS9 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 RNA5SP453-201ENST00000362503 119 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 RNU1-43P-201ENST00000365052 165 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.55□□□□□ -1.52
USP39Q53GS9 RNU6-761P-201ENST00000384148 107 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 RNU1-136P-201ENST00000384181 164 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 RNA5SP339-201ENST00000390987 122 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AL009179.1-201ENST00000406085 265 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 XKRYP4-201ENST00000414395 483 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.55□□□□□ -1.52
USP39Q53GS9 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.55□□□□□ -1.52
USP39Q53GS9 AC093162.1-201ENST00000419682 124 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.55□□□□□ -1.52
USP39Q53GS9 BX276092.6-201ENST00000430476 250 ntBASIC5.55□□□□□ -1.52
USP39Q53GS9 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.55□□□□□ -1.52
USP39Q53GS9 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms