Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 RN7SKP33-201ENST00000410942 340 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.96□□□□□ -1.62
CCNA1P78396 MTCO3P17-201ENST00000443775 513 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 AL157385.1-201ENST00000446973 268 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 AC021205.1-201ENST00000468797 348 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 AC108064.1-201ENST00000513791 460 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 RNA5SP303-201ENST00000516192 130 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 RNA5SP519-201ENST00000516480 119 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCNA1P78396 AC068446.3-201ENST00000555285 382 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCNA1P78396 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.96□□□□□ -1.62
CCNA1P78396 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC4.96□□□□□ -1.62
CCNA1P78396 COX6CP4-201ENST00000605798 228 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 AC010608.2-201ENST00000624830 470 ntBASIC4.96□□□□□ -1.62
CCNA1P78396 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.96□□□□□ -1.62
CCNA1P78396 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCNA1P78396 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCNA1P78396 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCNA1P78396 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.95□□□□□ -1.62
CCNA1P78396 Z95327.2-201ENST00000414579 1873 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.95□□□□□ -1.62
CCNA1P78396 AC011155.1-201ENST00000316512 456 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 RNU1-63P-201ENST00000383902 164 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 ENSAP1-201ENST00000392855 326 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 RNA5SP36-201ENST00000410197 133 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 MTCYBP7-201ENST00000419540 1134 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.95□□□□□ -1.62
CCNA1P78396 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.95□□□□□ -1.62
CCNA1P78396 ELOCP10-201ENST00000440624 327 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 TDGF1P1-201ENST00000445734 527 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 DDX39BP2-208ENST00000453923 258 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 RPL35AP15-201ENST00000468042 339 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.95□□□□□ -1.62
CCNA1P78396 RNA5SP73-201ENST00000516744 108 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.95□□□□□ -1.62
CCNA1P78396 AC090181.2-201ENST00000602975 672 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 AC084373.1-201ENST00000603311 235 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 ELOCP34-201ENST00000604436 327 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 AC012213.4-201ENST00000606457 354 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.95□□□□□ -1.62
CCNA1P78396 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.95□□□□□ -1.62
CCNA1P78396 CYP1D1P-201ENST00000416662 1433 ntBASIC4.95□□□□□ -1.62
CCNA1P78396 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCNA1P78396 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCNA1P78396 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCNA1P78396 AL672167.1-204ENST00000641875 3017 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AP001642.1-201ENST00000624727 2117 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.94□□□□□ -1.62
CCNA1P78396 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCNA1P78396 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.94□□□□□ -1.62
CCNA1P78396 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCNA1P78396 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
CCNA1P78396 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCNA1P78396 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCNA1P78396 MIR23A-201ENST00000385245 73 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 RNU6-603P-201ENST00000411403 107 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 RPL21P91-201ENST00000429231 479 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 CEACAMP1-201ENST00000434624 1035 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.94□□□□□ -1.62
CCNA1P78396 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.94□□□□□ -1.62
CCNA1P78396 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.94□□□□□ -1.62
CCNA1P78396 CALM1P2-201ENST00000452941 448 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 RPL23AP81-201ENST00000455252 467 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.94□□□□□ -1.62
CCNA1P78396 AC091959.2-201ENST00000477363 321 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 TPT1P3-201ENST00000492841 512 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.94□□□□□ -1.62
CCNA1P78396 NDUFB4P12-201ENST00000513465 390 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.94□□□□□ -1.62
CCNA1P78396 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.94□□□□□ -1.62
CCNA1P78396 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.94□□□□□ -1.62
CCNA1P78396 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 AC018552.3-201ENST00000567416 561 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AC053481.4-201ENST00000583164 216 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 MIR3158-1-201ENST00000583596 81 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.94□□□□□ -1.62
CCNA1P78396 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.94□□□□□ -1.62
CCNA1P78396 AC006133.1-201ENST00000617106 264 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 FP325313.1-201ENST00000638228 703 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 OR8B1P-202ENST00000641132 1178 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCNA1P78396 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCNA1P78396 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCNA1P78396 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.94□□□□□ -1.62
CCNA1P78396 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.94□□□□□ -1.62
CCNA1P78396 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.93□□□□□ -1.62
CCNA1P78396 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
CCNA1P78396 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCNA1P78396 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCNA1P78396 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCNA1P78396 AL022393.1-201ENST00000625142 1677 ntBASIC4.93□□□□□ -1.62
CCNA1P78396 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms