Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC062016.2-201ENST00000420950 676 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AL592293.2-201ENST00000422292 996 ntBASIC4.76□□□□□ -1.65
LHX1P48742 UBE2D3P3-201ENST00000426992 425 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX1P48742 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
LHX1P48742 HMGB1P26-201ENST00000452520 628 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AL591473.1-201ENST00000464297 313 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AC108751.2-201ENST00000469993 231 ntBASIC4.76□□□□□ -1.65
LHX1P48742 NIP7P2-201ENST00000485801 544 ntBASIC4.76□□□□□ -1.65
LHX1P48742 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 AC025674.1-201ENST00000507074 324 ntBASIC4.76□□□□□ -1.65
LHX1P48742 HPRT1P1-201ENST00000509498 657 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX1P48742 IGLVIV-65-201ENST00000517313 360 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 CIR1P1-201ENST00000524055 1133 ntBASIC4.76□□□□□ -1.65
LHX1P48742 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 AC008083.2-201ENST00000546707 476 ntBASIC4.76□□□□□ -1.65
LHX1P48742 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.76□□□□□ -1.65
LHX1P48742 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LHX1P48742 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX1P48742 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LHX1P48742 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX1P48742 AC120053.1-201ENST00000607706 736 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AC020634.1-201ENST00000608701 549 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AL391834.1-201ENST00000609609 560 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AL133445.2-201ENST00000611191 527 ntBASIC4.76□□□□□ -1.65
LHX1P48742 AC091905.2-201ENST00000623143 306 ntBASIC4.76□□□□□ -1.65
LHX1P48742 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.76□□□□□ -1.65
LHX1P48742 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX1P48742 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
LHX1P48742 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LHX1P48742 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX1P48742 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.75□□□□□ -1.65
LHX1P48742 AC093775.1-201ENST00000624154 1868 ntBASIC4.75□□□□□ -1.65
LHX1P48742 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.75□□□□□ -1.65
LHX1P48742 AC026523.2-201ENST00000625039 7739 ntBASIC4.75□□□□□ -1.65
LHX1P48742 NXPH1-205ENST00000602349 1953 ntBASIC4.75□□□□□ -1.65
LHX1P48742 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.75□□□□□ -1.65
LHX1P48742 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LHX1P48742 MTND5P11-201ENST00000511037 1812 ntBASIC4.75□□□□□ -1.65
LHX1P48742 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
LHX1P48742 OR5P1P-201ENST00000299512 925 ntBASIC4.75□□□□□ -1.65
LHX1P48742 RNU1-130P-201ENST00000363930 160 ntBASIC4.75□□□□□ -1.65
LHX1P48742 SNORA62-201ENST00000365493 153 ntBASIC4.75□□□□□ -1.65
LHX1P48742 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
LHX1P48742 MIR3065-201ENST00000390137 79 ntBASIC4.75□□□□□ -1.65
LHX1P48742 AC010385.1-201ENST00000412374 256 ntBASIC4.75□□□□□ -1.65
LHX1P48742 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX1P48742 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX1P48742 AC105402.1-201ENST00000413336 545 ntBASIC4.75□□□□□ -1.65
LHX1P48742 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX1P48742 AL512661.1-201ENST00000434586 1253 ntBASIC4.75□□□□□ -1.65
LHX1P48742 FTH1P16-201ENST00000435241 552 ntBASIC4.75□□□□□ -1.65
LHX1P48742 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX1P48742 TPT1P1-201ENST00000458495 518 ntBASIC4.75□□□□□ -1.65
LHX1P48742 RPS27AP17-201ENST00000463344 455 ntBASIC4.75□□□□□ -1.65
LHX1P48742 AP000942.1-201ENST00000463969 747 ntBASIC4.75□□□□□ -1.65
LHX1P48742 AC011276.1-201ENST00000469688 323 ntBASIC4.75□□□□□ -1.65
LHX1P48742 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
LHX1P48742 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX1P48742 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX1P48742 AC112206.4-201ENST00000515142 405 ntBASIC4.75□□□□□ -1.65
LHX1P48742 RNA5SP446-201ENST00000515955 82 ntBASIC4.75□□□□□ -1.65
LHX1P48742 SNORA31.13-201ENST00000516624 135 ntBASIC4.75□□□□□ -1.65
LHX1P48742 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.75□□□□□ -1.65
LHX1P48742 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.75□□□□□ -1.65
LHX1P48742 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX1P48742 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX1P48742 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX1P48742 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX1P48742 ELOCP28-201ENST00000590044 317 ntBASIC4.75□□□□□ -1.65
LHX1P48742 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.75□□□□□ -1.65
LHX1P48742 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX1P48742 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
LHX1P48742 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LHX1P48742 BTBD10P1-201ENST00000549824 1352 ntBASIC4.75□□□□□ -1.65
LHX1P48742 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
LHX1P48742 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.75□□□□□ -1.65
LHX1P48742 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LHX1P48742 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX1P48742 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX1P48742 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.74□□□□□ -1.65
LHX1P48742 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.74□□□□□ -1.65
LHX1P48742 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LHX1P48742 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX1P48742 AL592494.2-201ENST00000425455 1548 ntBASIC4.74□□□□□ -1.65
LHX1P48742 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX1P48742 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX1P48742 OR4K17-201ENST00000315543 1032 ntBASIC4.74□□□□□ -1.65
LHX1P48742 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX1P48742 MIR16-2-201ENST00000362117 81 ntBASIC4.74□□□□□ -1.65
LHX1P48742 RNA5SP509-201ENST00000364577 119 ntBASIC4.74□□□□□ -1.65
LHX1P48742 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
LHX1P48742 RNU6-225P-201ENST00000384613 103 ntBASIC4.74□□□□□ -1.65
LHX1P48742 RNU4-27P-201ENST00000410889 139 ntBASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms