Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BTBD10P2-201ENST00000404779 676 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 RNU4-6P-201ENST00000410804 122 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC6.09□□□□□ -1.43
COL8A1P27658 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 OR2AS1P-201ENST00000427827 319 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 RPL34P27-201ENST00000428810 349 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 FTH1P10-202ENST00000430907 550 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC108479.1-201ENST00000431142 427 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 ANKRD54P1-201ENST00000433115 471 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 SETP5-201ENST00000437270 562 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 AL161722.1-201ENST00000446972 1032 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 RN7SL552P-201ENST00000462094 276 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC097493.1-201ENST00000463958 372 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 SLC25A51P1-201ENST00000468432 871 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 RNU4-29P-201ENST00000515943 174 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 RNU6-150P-201ENST00000516237 95 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 RNU6-885P-201ENST00000516607 104 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 AL162632.2-201ENST00000553933 399 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC068831.4-201ENST00000556118 109 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 BNIP3P16-201ENST00000589779 534 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.09□□□□□ -1.43
COL8A1P27658 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC6.09□□□□□ -1.43
COL8A1P27658 AL670379.11-201ENST00000604059 253 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AL670379.10-201ENST00000604330 253 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AL670379.12-201ENST00000605291 253 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AL670379.9-201ENST00000605428 253 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC006157.1-201ENST00000611750 366 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.09□□□□□ -1.43
COL8A1P27658 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
COL8A1P27658 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 PLEKHS1-202ENST00000361048 3249 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 PLEKHS1-207ENST00000619563 3247 ntTSL 5 BASIC6.09□□□□□ -1.43
COL8A1P27658 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
COL8A1P27658 CDC27P3-201ENST00000635418 1910 ntBASIC6.09□□□□□ -1.44
COL8A1P27658 AC018765.1-201ENST00000623357 3446 ntBASIC6.09□□□□□ -1.44
COL8A1P27658 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
COL8A1P27658 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL8A1P27658 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC6.09□□□□□ -1.44
COL8A1P27658 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
COL8A1P27658 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL8A1P27658 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL8A1P27658 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC6.09□□□□□ -1.44
COL8A1P27658 AL096816.1-201ENST00000623300 2920 ntBASIC6.09□□□□□ -1.44
COL8A1P27658 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
COL8A1P27658 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.08□□□□□ -1.44
COL8A1P27658 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 CASK-204ENST00000378166 3123 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 LINC01613-201ENST00000561476 2780 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AC114546.3-201ENST00000623582 1734 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 OR52K3P-202ENST00000641797 1729 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.08□□□□□ -1.44
COL8A1P27658 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.08□□□□□ -1.44
COL8A1P27658 OR11H5P-202ENST00000641612 1325 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 FLJ42393-201ENST00000623801 2270 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL8A1P27658 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 RN7SKP275-201ENST00000364626 301 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 RNU6-200P-201ENST00000364743 107 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 SNORA20.2-201ENST00000383922 131 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 Y_RNA.414-201ENST00000384011 101 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 Y_RNA.785-201ENST00000384290 109 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 Y_RNA.512-201ENST00000384518 102 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 Y_RNA.530-201ENST00000384587 101 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AL445529.1-201ENST00000398713 389 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 RN7SKP144-201ENST00000411108 279 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC6.08□□□□□ -1.44
COL8A1P27658 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC6.08□□□□□ -1.44
COL8A1P27658 AC104837.2-201ENST00000427236 424 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 HMGB1P9-201ENST00000429856 646 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 GPR143P-201ENST00000434155 205 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms