| CNTN3 | Q9P232 | AC096741.1-201 | ENST00000472250 | 846 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC023598.1-201 | ENST00000472521 | 361 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | RPS3AP14-201 | ENST00000483907 | 780 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | CASP12-210 | ENST00000494737 | 961 nt | TSL 1 (best) BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC114981.1-201 | ENST00000503897 | 678 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC018710.1-201 | ENST00000506509 | 158 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | LYRM7-202 | ENST00000507584 | 317 nt | TSL 2 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC097375.2-201 | ENST00000510416 | 579 nt | TSL 5 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC108037.1-201 | ENST00000514103 | 423 nt | TSL 3 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AP001208.1-201 | ENST00000518612 | 408 nt | TSL 3 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | MTND1P35-201 | ENST00000526739 | 508 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AL353699.1-201 | ENST00000529078 | 365 nt | TSL 3 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | LINC02384-205 | ENST00000539404 | 785 nt | TSL 3 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC079905.1-201 | ENST00000549280 | 475 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC087311.2-201 | ENST00000549660 | 320 nt | TSL 4 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AL390334.1-201 | ENST00000556395 | 450 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC141257.3-201 | ENST00000572906 | 215 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | TTN-AS1-212 | ENST00000582847 | 1036 nt | TSL 5 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | MIR4310-201 | ENST00000582950 | 57 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC117569.1-201 | ENST00000584482 | 739 nt | TSL 3 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | TCF4-AS2-201 | ENST00000586467 | 445 nt | TSL 2 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC243967.1-201 | ENST00000598976 | 578 nt | APPRIS P1 TSL 5 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | NRBF2P5-201 | ENST00000603087 | 788 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AL022238.2-202 | ENST00000607915 | 658 nt | TSL 5 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AL136097.3-201 | ENST00000611097 | 505 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC015574.1-205 | ENST00000611285 | 524 nt | TSL 5 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AL445264.1-201 | ENST00000621719 | 171 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC021106.3-201 | ENST00000623925 | 531 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | AC116563.2-201 | ENST00000624751 | 535 nt | BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | LINC01955-201 | ENST00000626392 | 792 nt | TSL 5 BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | SMAD5-211 | ENST00000545279 | 7012 nt | APPRIS P1 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | NXF3-201 | ENST00000395065 | 1938 nt | APPRIS P1 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | VEZT-204 | ENST00000436874 | 4562 nt | APPRIS P1 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.34 | | |
| CNTN3 | Q9P232 | GDI2P1-201 | ENST00000429312 | 1336 nt | BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | PDE1A-204 | ENST00000410103 | 2000 nt | TSL 1 (best) BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RBMY1HP-201 | ENST00000382759 | 1389 nt | BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | C9orf135-AS1-201 | ENST00000439418 | 1375 nt | TSL 2 BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | HDAC1P2-201 | ENST00000453661 | 1398 nt | BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | SLC2A14-203 | ENST00000431042 | 3458 nt | APPRIS ALT2 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TRAPPC13-204 | ENST00000438419 | 1437 nt | APPRIS P4 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | NCOA6-202 | ENST00000374796 | 9311 nt | APPRIS P3 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC01505-205 | ENST00000636028 | 2298 nt | TSL 5 BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CYP3A43-201 | ENST00000222382 | 1515 nt | APPRIS P4 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | SEPT7-AS1-203 | ENST00000437235 | 3810 nt | TSL 5 BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | NUP210L-201 | ENST00000271854 | 5424 nt | APPRIS ALT2 TSL 5 BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC010168.2-201 | ENST00000562691 | 5428 nt | BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | DNAJC15-201 | ENST00000379221 | 7853 nt | APPRIS P1 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MDM4-217 | ENST00000621032 | 5592 nt | TSL 2 BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TRPM6-204 | ENST00000449912 | 8244 nt | APPRIS P1 TSL 1 (best) BASIC | 6.65 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CDC42SE2-201 | ENST00000360515 | 3591 nt | APPRIS P1 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MMP13-201 | ENST00000260302 | 2716 nt | APPRIS P1 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CPEB4-202 | ENST00000334035 | 6705 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC01527-201 | ENST00000419578 | 1997 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CHN1-201 | ENST00000295497 | 2047 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | CLCC1-205 | ENST00000369969 | 4343 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | PSMC6-201 | ENST00000445930 | 2188 nt | APPRIS P2 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TSHZ2-202 | ENST00000371497 | 12187 nt | APPRIS P1 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RASSF8-213 | ENST00000542865 | 2219 nt | APPRIS P1 TSL 2 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MCM10-201 | ENST00000378694 | 4587 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ZPLD1-201 | ENST00000306176 | 3619 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ZC3H11A-201 | ENST00000332127 | 5015 nt | APPRIS P1 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | TATDN1-201 | ENST00000276692 | 1018 nt | APPRIS P1 TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | HNMT-201 | ENST00000280096 | 504 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RN7SKP15-201 | ENST00000364742 | 309 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RNU6-780P-201 | ENST00000391030 | 104 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL590290.1-201 | ENST00000405336 | 380 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC091705.1-201 | ENST00000412197 | 209 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | EEF1A1P40-201 | ENST00000412883 | 573 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC245096.1-201 | ENST00000413104 | 546 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RPS7P8-201 | ENST00000418311 | 581 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ZNF90P2-204 | ENST00000419323 | 1075 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MS4A6A-202 | ENST00000420732 | 863 nt | TSL 1 (best) BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL513185.2-201 | ENST00000425543 | 193 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC127526.2-201 | ENST00000426436 | 775 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RPL7P11-201 | ENST00000437586 | 658 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL354794.1-201 | ENST00000442103 | 516 nt | TSL 3 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | FTLP8-201 | ENST00000446770 | 267 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL590365.1-201 | ENST00000450788 | 243 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | PCCA-AS1-203 | ENST00000455958 | 356 nt | TSL 3 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RN7SL221P-201 | ENST00000466190 | 281 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC098847.1-201 | ENST00000473094 | 348 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC015724.1-201 | ENST00000478577 | 156 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RPS29P25-201 | ENST00000481709 | 171 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RPS27P23-201 | ENST00000487608 | 251 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | MTND5P5-201 | ENST00000503764 | 376 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC02502-201 | ENST00000505122 | 642 nt | TSL 4 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC01091-201 | ENST00000508111 | 645 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RNA5SP340-201 | ENST00000517132 | 107 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC040970.1-202 | ENST00000517908 | 505 nt | TSL 3 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ARL2BPP5-201 | ENST00000523141 | 481 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | RGS4-207 | ENST00000527809 | 817 nt | TSL 4 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | FAM92A1P1-201 | ENST00000528023 | 890 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | LINC02406-201 | ENST00000553029 | 546 nt | TSL 3 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL162311.1-201 | ENST00000553046 | 601 nt | TSL 3 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL163932.1-201 | ENST00000555776 | 542 nt | TSL 4 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC009145.2-201 | ENST00000562685 | 377 nt | TSL 3 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | ZNF322P1-201 | ENST00000568013 | 1209 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC068408.2-201 | ENST00000584566 | 439 nt | TSL 3 BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AC103710.4-201 | ENST00000609301 | 899 nt | BASIC | 6.64 | □□□□□ -1.35 | | |
| CNTN3 | Q9P232 | AL445465.1-206 | ENST00000609544 | 528 nt | TSL 5 BASIC | 6.64 | □□□□□ -1.35 | | |