Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC093388.1-201ENST00000609166 430 ntBASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 AC015540.1-201ENST00000615828 501 ntBASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 SNORA11.6-201ENST00000619030 128 ntBASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 AL356266.1-201ENST00000623311 483 ntBASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 LINC00561-201ENST00000565815 2738 ntBASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 AC010329.2-201ENST00000595195 2737 ntBASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 AL161756.3-201ENST00000641216 2071 ntBASIC5.75□□□□□ -1.49
TRIM39Q9HCM9 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 USP9YP4-201ENST00000424401 1745 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC015689.2-201ENST00000528172 1738 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 BCORP1-203ENST00000513194 5093 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RNU6-374P-201ENST00000364146 108 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RNU6-444P-201ENST00000383988 108 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RNA5SP284-201ENST00000384547 118 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RPL23AP29-201ENST00000397284 453 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RNU2-16P-201ENST00000410712 136 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 MTCO1P21-201ENST00000416634 589 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RBMY2KP-201ENST00000418221 992 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 NIPA2P1-201ENST00000426223 976 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AL389925.1-201ENST00000432257 728 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RPL31P15-201ENST00000449770 338 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 SLC31A1P1-201ENST00000451221 567 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RPL26P28-201ENST00000451325 435 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC243772.1-201ENST00000451620 410 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 SUMO2P2-201ENST00000456482 255 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC090013.1-201ENST00000485147 480 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC097486.1-201ENST00000515331 210 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RNU6-202P-201ENST00000515998 96 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC078899.1-201ENST00000521432 1185 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 PCMTD1P2-201ENST00000565017 355 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 MIR3614-201ENST00000581261 86 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC090181.2-201ENST00000602975 672 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AL596327.1-201ENST00000603629 213 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC025594.3-201ENST00000613068 790 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AP005431.1-201ENST00000618479 319 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC092192.1-201ENST00000633154 1018 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 OR2L1P-202ENST00000641567 1023 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 AC125336.1-201ENST00000508893 2827 ntBASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRIM39Q9HCM9 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RNU5F-7P-201ENST00000363696 115 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RNY3P10-201ENST00000384764 102 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 MIR92A2-201ENST00000385299 75 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC009965.2-201ENST00000425328 970 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms