Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 AC119744.1-201ENST00000454746 1715 ntBASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 AC007114.2-201ENST00000576014 4281 ntBASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.96□□□□□ -1.46
UBE3DQ7Z6J8 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 HDAC1P2-201ENST00000453661 1398 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AL512646.1-201ENST00000269395 1077 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 RNU6-251P-201ENST00000363235 104 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 RNU6-1322P-201ENST00000364309 107 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 Y_RNA.409-201ENST00000383990 98 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC116036.1-201ENST00000412199 367 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 USP9YP36-201ENST00000424581 829 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC073069.1-201ENST00000428657 441 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 NPM1P34-201ENST00000428821 893 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC133104.1-201ENST00000429100 218 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 CBX1P1-201ENST00000440184 427 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 POU5F1P5-201ENST00000445059 658 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC097359.1-201ENST00000447946 463 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 RANP2-201ENST00000456833 229 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 RPL39P36-201ENST00000490784 156 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 NAF1-205ENST00000509434 385 ntTSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC036111.2-201ENST00000533247 901 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC007424.1-203ENST00000554613 687 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 OR4H6P-201ENST00000563771 921 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AP001180.3-201ENST00000582221 145 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 MIR4795-201ENST00000584182 89 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC090948.2-201ENST00000607363 564 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 SNORA74.4-201ENST00000607595 199 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 CDRT1-208ENST00000630868 794 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC010325.3-201ENST00000641084 394 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 CASC19-284ENST00000642142 1868 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 AC090017.1-201ENST00000548612 1779 ntBASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.95□□□□□ -1.46
UBE3DQ7Z6J8 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 AC130360.2-201ENST00000533477 1556 ntBASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 AC096921.2-201ENST00000561507 1916 ntBASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
UBE3DQ7Z6J8 RN7SKP184-201ENST00000362348 333 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 148.6 ms