Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MTND3P3-201ENST00000505004 126 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 TMEM248P1-201ENST00000510579 951 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 IGKV2D-36-201ENST00000518643 226 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 MTND5P21-201ENST00000531961 522 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC6.25□□□□□ -1.41
HMGB1P09429 AC126177.5-201ENST00000549599 178 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 AC040958.1-201ENST00000561102 201 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 MIR4310-201ENST00000582950 57 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.25□□□□□ -1.41
HMGB1P09429 GAS5-AS1-201ENST00000602767 694 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AL445435.1-201ENST00000604232 665 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AP003973.1-201ENST00000604639 691 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AC011626.1-201ENST00000604710 562 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 AC068722.2-201ENST00000618734 544 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
HMGB1P09429 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.25□□□□□ -1.41
HMGB1P09429 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
HMGB1P09429 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HMGB1P09429 AL355578.1-201ENST00000607405 1328 ntBASIC6.25□□□□□ -1.41
HMGB1P09429 AL034549.2-201ENST00000618285 3373 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 AL356489.2-201ENST00000566968 3528 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 LDHAL6CP-202ENST00000550738 3224 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
HMGB1P09429 SNORA73.1-201ENST00000363107 205 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 RNA5SP187-201ENST00000384400 119 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 RNU6-1257P-201ENST00000384625 110 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 MIR105-1-201ENST00000385222 81 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 RNU6-298P-201ENST00000390888 96 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 Y_RNA.578-201ENST00000390903 88 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 OR8V1P-201ENST00000395193 873 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AL133264.1-201ENST00000407157 562 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 COX5BP7-201ENST00000414780 274 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 AC027644.1-201ENST00000419595 298 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AL121776.1-201ENST00000429337 372 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC6.24□□□□□ -1.41
HMGB1P09429 CYCSP6-201ENST00000434498 302 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 SPRYD7P1-201ENST00000443861 570 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AC104634.1-201ENST00000452720 462 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 MRPL42P4-201ENST00000453267 443 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 RN7SL189P-201ENST00000468631 289 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC6.24□□□□□ -1.41
HMGB1P09429 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 RNA5SP497-201ENST00000516081 97 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 RNA5SP373-201ENST00000517271 95 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.24□□□□□ -1.41
HMGB1P09429 OR8I1P-201ENST00000529291 931 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 RPL10P14-201ENST00000565265 298 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 RN7SL708P-201ENST00000580952 299 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 SNORD39.3-201ENST00000584451 71 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 AC008814.1-201ENST00000603797 406 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AC025588.3-201ENST00000604182 274 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AC093673.2-201ENST00000609674 331 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 AC010872.1-201ENST00000624225 675 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 AC013437.2-201ENST00000639587 677 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGB1P09429 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.24□□□□□ -1.41
HMGB1P09429 SEPT7P7-201ENST00000420492 1301 ntBASIC6.24□□□□□ -1.41
HMGB1P09429 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGB1P09429 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 AC092376.2-201ENST00000622621 4116 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HMGB1P09429 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HMGB1P09429 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HMGB1P09429 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
HMGB1P09429 RNA5SP242-201ENST00000364171 118 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms