Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MRPL35P4-201ENST00000453682 566 ntBASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 AC027176.2-201ENST00000559166 746 ntBASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 AC010680.3-201ENST00000604215 520 ntBASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 AL049634.3-201ENST00000604968 457 ntBASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 AC008966.2-201ENST00000606157 453 ntBASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 VPS35P1-201ENST00000563400 1518 ntBASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 RPL36AP10-201ENST00000421785 322 ntBASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 RPL7P1-201ENST00000468161 747 ntBASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 AL034408.1-202ENST00000636088 415 ntBASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 AC233263.6-201ENST00000631132 1963 ntBASIC5.33□□□□□ -1.56
SHANK3Q9BYB0 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 SNORD96B-201ENST00000386148 79 ntBASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 PDSS1P2-201ENST00000449397 678 ntBASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 AP001486.1-201ENST00000463339 476 ntBASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SHANK3Q9BYB0 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 RNVU1-14-201ENST00000384770 164 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 FCF1P7-201ENST00000451185 558 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC115621.1-201ENST00000604653 858 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC107294.1-201ENST00000609524 467 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC140113.4-201ENST00000622087 222 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AL513548.1-201ENST00000562904 1724 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 HMGB3P19-201ENST00000403971 560 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 PRELID3BP10-201ENST00000431957 584 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 RPL7P28-201ENST00000437739 740 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC083863.1-201ENST00000438811 231 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 SETP4-201ENST00000455717 868 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC090602.1-201ENST00000469695 252 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC087369.1-201ENST00000520775 996 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC090151.1-201ENST00000520784 730 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AL031985.2-201ENST00000600955 480 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 MIR6868-201ENST00000611215 58 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 HSPD1P14-201ENST00000432666 1618 ntBASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
SHANK3Q9BYB0 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 AL133268.1-201ENST00000405676 1401 ntBASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHANK3Q9BYB0 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms