Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.04□□□□□ -1.6
BRCA1P38398 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
BRCA1P38398 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
BRCA1P38398 AC139426.3-201ENST00000605648 2059 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.04□□□□□ -1.6
BRCA1P38398 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.04□□□□□ -1.6
BRCA1P38398 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
BRCA1P38398 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
BRCA1P38398 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.04□□□□□ -1.6
BRCA1P38398 MIR30B-201ENST00000384850 88 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.04□□□□□ -1.6
BRCA1P38398 RN7SL293P-201ENST00000481765 281 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 OR8I1P-201ENST00000529291 931 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.04□□□□□ -1.6
BRCA1P38398 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.04□□□□□ -1.6
BRCA1P38398 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.04□□□□□ -1.6
BRCA1P38398 AC005520.3-201ENST00000602874 370 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 AL391497.1-201ENST00000608671 547 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BRCA1P38398 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.04□□□□□ -1.6
BRCA1P38398 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BRCA1P38398 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
BRCA1P38398 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
BRCA1P38398 AC100778.3-201ENST00000580060 1750 ntBASIC5.04□□□□□ -1.6
BRCA1P38398 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
BRCA1P38398 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.03□□□□□ -1.6
BRCA1P38398 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
BRCA1P38398 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.03□□□□□ -1.6
BRCA1P38398 HMGN2P27-201ENST00000427352 270 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 RPL7P1-201ENST00000468161 747 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 RPL7P9-201ENST00000468715 747 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.03□□□□□ -1.6
BRCA1P38398 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
BRCA1P38398 AC027455.1-201ENST00000574104 594 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
BRCA1P38398 AL672167.1-204ENST00000641875 3017 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
BRCA1P38398 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
BRCA1P38398 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
BRCA1P38398 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
BRCA1P38398 MTND5P1-201ENST00000445440 1375 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 MIR34B-201ENST00000385076 84 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 MIR921-201ENST00000401133 56 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 AL133244.1-201ENST00000456007 258 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 WBP1LP4-201ENST00000505043 344 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.03□□□□□ -1.6
BRCA1P38398 AL031985.2-201ENST00000600955 480 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 AP001002.2-201ENST00000625137 386 ntBASIC5.03□□□□□ -1.6
BRCA1P38398 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.03□□□□□ -1.6
BRCA1P38398 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.02□□□□□ -1.61
BRCA1P38398 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
BRCA1P38398 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BRCA1P38398 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BRCA1P38398 OR56B2P-201ENST00000317102 954 ntBASIC5.02□□□□□ -1.61
BRCA1P38398 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.02□□□□□ -1.61
BRCA1P38398 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.02□□□□□ -1.61
BRCA1P38398 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.02□□□□□ -1.61
BRCA1P38398 AC006064.5-201ENST00000541782 248 ntBASIC5.02□□□□□ -1.61
BRCA1P38398 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.02□□□□□ -1.61
BRCA1P38398 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.02□□□□□ -1.61
BRCA1P38398 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BRCA1P38398 AC243654.2-201ENST00000612843 443 ntBASIC5.02□□□□□ -1.61
BRCA1P38398 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
BRCA1P38398 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BRCA1P38398 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
BRCA1P38398 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.01□□□□□ -1.61
BRCA1P38398 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 U3.23-201ENST00000391132 200 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 AL122016.1-201ENST00000403365 367 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.01□□□□□ -1.61
BRCA1P38398 NPM1P25-201ENST00000429734 854 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 NMNAT1P2-201ENST00000435192 860 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 FCF1P7-201ENST00000451185 558 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 UBE2CP3-201ENST00000502715 450 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.01□□□□□ -1.61
BRCA1P38398 AC091516.1-201ENST00000549191 703 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.01□□□□□ -1.61
BRCA1P38398 AC005000.2-201ENST00000605468 310 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 AL031666.3-201ENST00000609320 1006 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
BRCA1P38398 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.01□□□□□ -1.61
BRCA1P38398 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BRCA1P38398 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
BRCA1P38398 AC011755.1-201ENST00000623763 2049 ntBASIC5.01□□□□□ -1.61
BRCA1P38398 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
BRCA1P38398 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.01□□□□□ -1.61
BRCA1P38398 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms