Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL391261.4-201ENST00000616012 481 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 MIR7702-201ENST00000621931 59 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 AC073530.2-201ENST00000623987 261 ntBASIC5.1□□□□□ -1.59
COL5A3P25940 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL5A3P25940 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL5A3P25940 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A3P25940 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 RNU6-525P-201ENST00000363685 104 ntBASIC5.09□□□□□ -1.59
COL5A3P25940 MTCO1P54-201ENST00000430139 712 ntBASIC5.09□□□□□ -1.59
COL5A3P25940 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.09□□□□□ -1.59
COL5A3P25940 PPIAP15-201ENST00000479662 484 ntBASIC5.09□□□□□ -1.59
COL5A3P25940 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.09□□□□□ -1.59
COL5A3P25940 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.09□□□□□ -1.59
COL5A3P25940 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.09□□□□□ -1.59
COL5A3P25940 AL049840.6-202ENST00000603373 279 ntBASIC5.09□□□□□ -1.59
COL5A3P25940 AC064801.1-201ENST00000612025 407 ntBASIC5.09□□□□□ -1.59
COL5A3P25940 AC019278.1-201ENST00000623516 479 ntBASIC5.09□□□□□ -1.59
COL5A3P25940 AL034408.1-202ENST00000636088 415 ntBASIC5.09□□□□□ -1.59
COL5A3P25940 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
COL5A3P25940 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
COL5A3P25940 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
COL5A3P25940 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.09□□□□□ -1.59
COL5A3P25940 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
COL5A3P25940 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
COL5A3P25940 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
COL5A3P25940 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A3P25940 AC058791.1-201ENST00000608412 3198 ntBASIC5.09□□□□□ -1.6
COL5A3P25940 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL5A3P25940 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.09□□□□□ -1.6
COL5A3P25940 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
COL5A3P25940 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC5.09□□□□□ -1.6
COL5A3P25940 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.09□□□□□ -1.6
COL5A3P25940 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.09□□□□□ -1.6
COL5A3P25940 AL159987.2-201ENST00000432754 307 ntBASIC5.09□□□□□ -1.6
COL5A3P25940 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.09□□□□□ -1.6
COL5A3P25940 RNU1-95P-201ENST00000516357 160 ntBASIC5.09□□□□□ -1.6
COL5A3P25940 SCARNA13-201ENST00000516672 275 ntBASIC5.09□□□□□ -1.6
COL5A3P25940 RNU1-128P-201ENST00000516704 160 ntBASIC5.09□□□□□ -1.6
COL5A3P25940 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.09□□□□□ -1.6
COL5A3P25940 THAP12P5-201ENST00000405864 2275 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 AL139039.2-201ENST00000407436 479 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 AC245052.5-201ENST00000416320 649 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A3P25940 NPM1P34-201ENST00000428821 893 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 RPS26P2-201ENST00000440331 348 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 RPL7P24-201ENST00000493052 752 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 UBE2CP3-201ENST00000502715 450 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.08□□□□□ -1.6
COL5A3P25940 HMGN1P15-201ENST00000513870 295 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A3P25940 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A3P25940 AC015871.5-202ENST00000623252 701 ntBASIC5.08□□□□□ -1.6
COL5A3P25940 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
COL5A3P25940 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
COL5A3P25940 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A3P25940 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A3P25940 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
COL5A3P25940 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A3P25940 NPM1P28-201ENST00000492269 840 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.07□□□□□ -1.6
COL5A3P25940 AC010503.3-201ENST00000594355 540 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 AC091167.4-201ENST00000605079 184 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 U3.45-201ENST00000607547 219 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 AC005344.1-201ENST00000613391 459 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 AL138721.1-201ENST00000616756 179 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 AP005264.7-201ENST00000625003 745 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
COL5A3P25940 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A3P25940 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL5A3P25940 AL672167.1-203ENST00000641299 2975 ntBASIC5.07□□□□□ -1.6
COL5A3P25940 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
COL5A3P25940 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A3P25940 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL5A3P25940 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.06□□□□□ -1.6
COL5A3P25940 PTMAP5-201ENST00000393073 333 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 SKP1P3-201ENST00000429280 487 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 RPL7P4-203ENST00000430239 730 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.06□□□□□ -1.6
COL5A3P25940 AL451050.1-201ENST00000450126 415 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.06□□□□□ -1.6
COL5A3P25940 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.06□□□□□ -1.6
COL5A3P25940 AC138832.1-201ENST00000522871 556 ntBASIC5.06□□□□□ -1.6
COL5A3P25940 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms