Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC020910.2-201ENST00000603635 610 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RNU6-84P-201ENST00000607737 102 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AL359091.2-201ENST00000609303 556 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC055764.2-201ENST00000610089 670 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC245014.3-201ENST00000618589 347 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AL354854.1-201ENST00000455940 1363 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 QRSL1P1-201ENST00000400977 1540 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC005005.4-201ENST00000623789 16698 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 SELENOWP1-201ENST00000322792 252 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 RPL35AP3-201ENST00000414680 288 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 RPS4XP5-201ENST00000419038 768 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 CNOT7P1-201ENST00000429006 852 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 BTF3P10-201ENST00000433415 495 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 PNKDP1-201ENST00000435914 430 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 TUBB4BP6-201ENST00000437576 479 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC005077.1-201ENST00000449226 375 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 GAPDHP14-201ENST00000450472 937 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC118758.1-202ENST00000454719 225 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC084024.2-201ENST00000503480 791 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 MTCO3P9-201ENST00000506989 781 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 RN7SKP183-201ENST00000517169 324 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AP003396.4-201ENST00000527574 265 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC084121.1-201ENST00000533882 835 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 RPA2P1-201ENST00000556557 721 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC006504.3-201ENST00000586818 523 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 RPL12P48-201ENST00000605620 304 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC073137.1-201ENST00000605636 634 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC145423.1-201ENST00000605712 336 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC104458.1-201ENST00000608243 463 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AC091304.9-201ENST00000612091 226 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 AL607023.1-201ENST00000620045 248 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 MIR6806-201ENST00000622141 64 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 MTND5P42-201ENST00000637720 498 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 OR9K1P-202ENST00000641111 3217 ntBASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC39Q9UFE4 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 AC011933.2-201ENST00000578539 2790 ntBASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 AC093225.1-201ENST00000506867 1408 ntBASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 AC092111.2-201ENST00000611627 1414 ntBASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 AC104966.1-201ENST00000467010 1464 ntBASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 CNOT6LP1-201ENST00000559681 1462 ntBASIC6.65□□□□□ -1.35
CCDC39Q9UFE4 PSG10P-201ENST00000501199 1500 ntBASIC6.65□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 330.3 ms