Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 GSTP1P1-201ENST00000548078 319 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA1P49639 AC005341.1-201ENST00000571086 708 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 MTCO1P40-201ENST00000574371 625 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 MTND3P13-201ENST00000574391 343 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC069366.1-201ENST00000583159 838 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC4.29□□□□□ -1.72
HOXA1P49639 AC091057.2-201ENST00000602594 792 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AL138895.2-201ENST00000603019 178 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AL353778.1-201ENST00000603149 408 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC091979.2-201ENST00000607514 214 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC097065.2-201ENST00000608159 533 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 MIR6839-201ENST00000620425 113 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC007342.8-201ENST00000623278 678 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AP003485.2-201ENST00000623636 610 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC004777.1-201ENST00000624317 287 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AC009039.2-201ENST00000624524 529 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 AP003400.3-201ENST00000624904 346 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
HOXA1P49639 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 ZNF876P-202ENST00000398732 1485 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA1P49639 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HOXA1P49639 AC106872.5-201ENST00000508856 1416 ntBASIC4.29□□□□□ -1.72
HOXA1P49639 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA1P49639 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.29□□□□□ -1.72
HOXA1P49639 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 AC108751.5-201ENST00000492880 1336 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC023421.1-201ENST00000590535 1785 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 RNU6-236P-201ENST00000363886 106 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RNA5SP394-201ENST00000364216 119 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RN7SKP275-201ENST00000364626 301 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RNU4-28P-201ENST00000364739 141 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RNU4-31P-201ENST00000384211 141 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RNA5SP372-201ENST00000390836 115 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AL645733.1-201ENST00000402250 217 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 MTCO2P31-201ENST00000402702 684 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.28□□□□□ -1.72
HOXA1P49639 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXA1P49639 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXA1P49639 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 CYCSP11-201ENST00000436426 315 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RPL7P29-201ENST00000437151 728 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 PTENP1-201ENST00000447117 1215 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC104306.1-201ENST00000449702 371 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC004815.1-201ENST00000484185 331 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RPL7P41-201ENST00000485823 957 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RPL5P23-201ENST00000496040 868 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXA1P49639 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 PGBD4P4-201ENST00000509673 613 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 APOBEC3AP1-201ENST00000511396 287 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AC119751.1-201ENST00000513357 765 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 RNA5SP271-201ENST00000516700 88 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 SNORA43.3-201ENST00000517240 103 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXA1P49639 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXA1P49639 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 MTND4P33-201ENST00000556706 766 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AC145350.1-201ENST00000567426 208 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA1P49639 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC022884.2-201ENST00000578535 580 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXA1P49639 AL035411.2-201ENST00000604022 421 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AL583856.2-201ENST00000606298 543 ntBASIC4.28□□□□□ -1.72
HOXA1P49639 AC078899.5-201ENST00000612475 178 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms