Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
USF1P22415 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
USF1P22415 AL672167.1-205ENST00000641112 3080 ntBASIC3.92□□□□□ -1.78
USF1P22415 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
USF1P22415 HSPD1P11-201ENST00000508643 1702 ntBASIC3.92□□□□□ -1.78
USF1P22415 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
USF1P22415 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
USF1P22415 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC3.91□□□□□ -1.78
USF1P22415 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 DDX18P4-201ENST00000511690 1966 ntBASIC3.91□□□□□ -1.78
USF1P22415 AL133243.3-201ENST00000617415 3004 ntBASIC3.91□□□□□ -1.78
USF1P22415 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 FAM3C2-201ENST00000312214 681 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC008549.2-201ENST00000333482 706 ntBASIC3.91□□□□□ -1.78
USF1P22415 RNU6-670P-201ENST00000364312 104 ntBASIC3.91□□□□□ -1.78
USF1P22415 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.91□□□□□ -1.78
USF1P22415 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
USF1P22415 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 AL590806.1-201ENST00000415818 853 ntBASIC3.91□□□□□ -1.78
USF1P22415 VN1R37P-201ENST00000419096 748 ntBASIC3.91□□□□□ -1.78
USF1P22415 RGS17P1-201ENST00000423358 553 ntBASIC3.91□□□□□ -1.78
USF1P22415 AL645608.4-201ENST00000423619 154 ntBASIC3.91□□□□□ -1.78
USF1P22415 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.91□□□□□ -1.78
USF1P22415 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.91□□□□□ -1.78
USF1P22415 NDUFA5P1-201ENST00000433858 341 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC097523.2-201ENST00000435551 652 ntBASIC3.91□□□□□ -1.78
USF1P22415 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.91□□□□□ -1.78
USF1P22415 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.91□□□□□ -1.78
USF1P22415 AL606490.8-201ENST00000441624 319 ntBASIC3.91□□□□□ -1.78
USF1P22415 AL354710.1-201ENST00000453641 246 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC079168.2-201ENST00000453977 416 ntBASIC3.91□□□□□ -1.78
USF1P22415 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.91□□□□□ -1.78
USF1P22415 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.91□□□□□ -1.78
USF1P22415 AC021205.1-201ENST00000468797 348 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC011276.1-201ENST00000469688 323 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC109327.1-201ENST00000471666 403 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.91□□□□□ -1.78
USF1P22415 AC106806.2-201ENST00000509365 500 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.91□□□□□ -1.78
USF1P22415 AC134698.5-201ENST00000519444 336 ntBASIC3.91□□□□□ -1.78
USF1P22415 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC3.91□□□□□ -1.78
USF1P22415 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.91□□□□□ -1.78
USF1P22415 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.91□□□□□ -1.78
USF1P22415 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.91□□□□□ -1.78
USF1P22415 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.91□□□□□ -1.78
USF1P22415 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.91□□□□□ -1.78
USF1P22415 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.91□□□□□ -1.78
USF1P22415 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 AC008782.1-201ENST00000603386 430 ntBASIC3.91□□□□□ -1.78
USF1P22415 RNF138P2-201ENST00000603490 592 ntBASIC3.91□□□□□ -1.78
USF1P22415 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.91□□□□□ -1.78
USF1P22415 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 AC145207.9-201ENST00000623802 325 ntBASIC3.91□□□□□ -1.78
USF1P22415 AC011815.3-201ENST00000624194 473 ntBASIC3.91□□□□□ -1.78
USF1P22415 BCLAF1P2-201ENST00000624956 2609 ntBASIC3.91□□□□□ -1.78
USF1P22415 U3.53-201ENST00000628922 216 ntBASIC3.91□□□□□ -1.78
USF1P22415 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
USF1P22415 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
USF1P22415 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
USF1P22415 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
USF1P22415 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
USF1P22415 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.9□□□□□ -1.78
USF1P22415 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
USF1P22415 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
USF1P22415 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
USF1P22415 AC009313.2-201ENST00000417893 1941 ntBASIC3.9□□□□□ -1.78
USF1P22415 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.9□□□□□ -1.78
USF1P22415 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
USF1P22415 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
USF1P22415 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
USF1P22415 RNA5SP509-201ENST00000364577 119 ntBASIC3.9□□□□□ -1.79
USF1P22415 RNU6-225P-201ENST00000384613 103 ntBASIC3.9□□□□□ -1.79
USF1P22415 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
USF1P22415 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.9□□□□□ -1.79
USF1P22415 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.9□□□□□ -1.79
USF1P22415 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.9□□□□□ -1.79
USF1P22415 GAPDHP49-201ENST00000421421 961 ntBASIC3.9□□□□□ -1.79
USF1P22415 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC3.9□□□□□ -1.79
USF1P22415 AL355994.1-201ENST00000424379 260 ntBASIC3.9□□□□□ -1.79
USF1P22415 RPS26P47-201ENST00000427219 348 ntBASIC3.9□□□□□ -1.79
USF1P22415 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC3.9□□□□□ -1.79
USF1P22415 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.9□□□□□ -1.79
USF1P22415 AC004938.1-201ENST00000438468 308 ntBASIC3.9□□□□□ -1.79
USF1P22415 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.9□□□□□ -1.79
USF1P22415 RPS26P2-201ENST00000440331 348 ntBASIC3.9□□□□□ -1.79
USF1P22415 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.9□□□□□ -1.79
USF1P22415 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms