Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 ANKRD18DP-204ENST00000455355 1975 ntBASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 AC008622.2-201ENST00000617006 1229 ntBASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
CCDC61Q9Y6R9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 PRSS44-201ENST00000515154 1146 ntBASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 AC140113.3-201ENST00000605663 199 ntBASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC61Q9Y6R9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC26.58■■□□□ 1.84
CCDC61Q9Y6R9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC26.57■■□□□ 1.84
CCDC61Q9Y6R9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 PCED1CP-201ENST00000419887 785 ntBASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 AC009947.2-201ENST00000444014 672 ntBASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC26.56■■□□□ 1.84
CCDC61Q9Y6R9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC26.55■■□□□ 1.84
CCDC61Q9Y6R9 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 AL359075.1-203ENST00000462729 1002 ntBASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC26.54■■□□□ 1.84
CCDC61Q9Y6R9 METTL23-204ENST00000586752 904 ntTSL 2 BASIC26.54■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms