Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 AL023973.1-201ENST00000624619 620 ntBASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHGA1Q9Y5H4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 AL691432.3-201ENST00000621860 400 ntBASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
PCDHGA1Q9Y5H4 AC092720.2-201ENST00000602388 1665 ntBASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 RNF165-205ENST00000588679 2904 ntBASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHGA1Q9Y5H4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 VENTXP5-201ENST00000523979 775 ntBASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 CKBP1-201ENST00000565489 1086 ntBASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 CLEC4GP1-201ENST00000596555 870 ntBASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHGA1Q9Y5H4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDHGA1Q9Y5H4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PCDHGA1Q9Y5H4 FEM1AP4-201ENST00000443167 1987 ntBASIC18.64■□□□□ 0.58
PCDHGA1Q9Y5H4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms