Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX41Q9UJV9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
DDX41Q9UJV9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
DDX41Q9UJV9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
DDX41Q9UJV9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.33■■□□□ 1.16
DDX41Q9UJV9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
DDX41Q9UJV9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.33■■□□□ 1.16
DDX41Q9UJV9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
DDX41Q9UJV9 AC116351.2-201ENST00000606540 1585 ntBASIC22.33■■□□□ 1.16
DDX41Q9UJV9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 FAM210CP-201ENST00000445714 574 ntBASIC22.32■■□□□ 1.16
DDX41Q9UJV9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 AC097493.4-201ENST00000641197 219 ntBASIC22.32■■□□□ 1.16
DDX41Q9UJV9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX41Q9UJV9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 KRT16P6-202ENST00000425692 1426 ntBASIC22.31■■□□□ 1.16
DDX41Q9UJV9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 TFP1-202ENST00000475455 1573 ntBASIC22.31■■□□□ 1.16
DDX41Q9UJV9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 NUDT16P1-203ENST00000513809 620 ntBASIC22.31■■□□□ 1.16
DDX41Q9UJV9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 AP006587.1-201ENST00000534129 1502 ntBASIC22.31■■□□□ 1.16
DDX41Q9UJV9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX41Q9UJV9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 NIFKP9-201ENST00000419265 221 ntBASIC22.3■■□□□ 1.16
DDX41Q9UJV9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
DDX41Q9UJV9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms