Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AL591424.1-201ENST00000442569 1213 ntBASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 AC211476.1-201ENST00000503899 468 ntBASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 AL035252.4-201ENST00000624174 288 ntBASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 FAM215A-202ENST00000632077 792 ntBASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.78■□□□□ 0.76
COL25A1Q9BXS0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 MIR662-201ENST00000384847 95 ntBASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 NUS1P2-201ENST00000417358 873 ntBASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 AC005034.1-201ENST00000426657 489 ntBASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 AC040169.1-201ENST00000565382 521 ntBASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 AC079602.3-201ENST00000623931 403 ntBASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.77■□□□□ 0.76
COL25A1Q9BXS0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL25A1Q9BXS0 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 TFP1-202ENST00000475455 1573 ntBASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.76■□□□□ 0.75
COL25A1Q9BXS0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 HLA-F-220ENST00000434407 884 ntBASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 KRT18P3-201ENST00000451602 1288 ntBASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
COL25A1Q9BXS0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 AC106028.4-201ENST00000614509 607 ntBASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 AL117328.2-201ENST00000624617 1940 ntBASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL25A1Q9BXS0 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms