Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPRD1AQ96P16 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPRD1AQ96P16 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPRD1AQ96P16 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPRD1AQ96P16 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPRD1AQ96P16 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPRD1AQ96P16 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.05■□□□□ 0.8
RPRD1AQ96P16 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
RPRD1AQ96P16 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 AFG3L1P-217ENST00000557444 2447 ntBASIC20.03■□□□□ 0.8
RPRD1AQ96P16 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 AC125437.2-201ENST00000625180 2167 ntBASIC20.03■□□□□ 0.8
RPRD1AQ96P16 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 MIR4785-201ENST00000585005 73 ntBASIC20.03■□□□□ 0.8
RPRD1AQ96P16 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.03■□□□□ 0.8
RPRD1AQ96P16 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 AL355355.2-201ENST00000442321 338 ntBASIC20.02■□□□□ 0.8
RPRD1AQ96P16 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 AC026471.5-201ENST00000615068 467 ntBASIC20.02■□□□□ 0.8
RPRD1AQ96P16 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RPRD1AQ96P16 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RPRD1AQ96P16 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.02■□□□□ 0.79
RPRD1AQ96P16 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RPRD1AQ96P16 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
RPRD1AQ96P16 KRT17P2-201ENST00000300992 1314 ntBASIC20.02■□□□□ 0.79
RPRD1AQ96P16 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.01■□□□□ 0.79
RPRD1AQ96P16 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RPRD1AQ96P16 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20■□□□□ 0.79
RPRD1AQ96P16 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20■□□□□ 0.79
RPRD1AQ96P16 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RPRD1AQ96P16 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
RPRD1AQ96P16 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RPRD1AQ96P16 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RPRD1AQ96P16 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms