Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 GPX1P1-201ENST00000388829 606 ntBASIC20.94■□□□□ 0.94
CCDC42Q96M95 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC42Q96M95 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC42Q96M95 TEX21P-204ENST00000641479 1693 ntBASIC20.93■□□□□ 0.94
CCDC42Q96M95 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC42Q96M95 AL049812.1-201ENST00000432563 2267 ntBASIC20.93■□□□□ 0.94
CCDC42Q96M95 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC42Q96M95 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC42Q96M95 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC42Q96M95 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC42Q96M95 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC42Q96M95 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC42Q96M95 AC005181.1-201ENST00000604782 1256 ntBASIC20.93■□□□□ 0.94
CCDC42Q96M95 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC42Q96M95 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC42Q96M95 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC42Q96M95 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC42Q96M95 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC42Q96M95 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC42Q96M95 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC42Q96M95 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC42Q96M95 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
CCDC42Q96M95 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC42Q96M95 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms