Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 AC091874.3-201ENST00000512672 1195 ntBASIC19.44■□□□□ 0.7
VPS39Q96JC1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 AC006557.6-201ENST00000623071 864 ntBASIC19.44■□□□□ 0.7
VPS39Q96JC1 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
VPS39Q96JC1 AC124283.5-201ENST00000624661 1809 ntBASIC19.44■□□□□ 0.7
VPS39Q96JC1 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS39Q96JC1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.43■□□□□ 0.7
VPS39Q96JC1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 BCL2-203ENST00000589955 5011 ntBASIC19.43■□□□□ 0.7
VPS39Q96JC1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS39Q96JC1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS39Q96JC1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS39Q96JC1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 GUSBP6-202ENST00000438529 1198 ntBASIC19.43■□□□□ 0.7
VPS39Q96JC1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS39Q96JC1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS39Q96JC1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS39Q96JC1 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS39Q96JC1 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS39Q96JC1 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS39Q96JC1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS39Q96JC1 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS39Q96JC1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 MIR4758-201ENST00000577688 71 ntBASIC19.42■□□□□ 0.7
VPS39Q96JC1 AC092666.2-201ENST00000613287 246 ntBASIC19.42■□□□□ 0.7
VPS39Q96JC1 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 AC093503.3-201ENST00000624917 2352 ntBASIC19.42■□□□□ 0.7
VPS39Q96JC1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS39Q96JC1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms