Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB4Q8WW32 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HMGB4Q8WW32 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGB4Q8WW32 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB4Q8WW32 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 AL023803.3-201ENST00000615559 522 ntBASIC19.49■□□□□ 0.71
HMGB4Q8WW32 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGB4Q8WW32 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 AL031133.1-201ENST00000406807 723 ntBASIC19.48■□□□□ 0.71
HMGB4Q8WW32 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 MYC-208ENST00000641036 567 ntBASIC19.48■□□□□ 0.71
HMGB4Q8WW32 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HMGB4Q8WW32 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.47■□□□□ 0.71
HMGB4Q8WW32 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.47■□□□□ 0.71
HMGB4Q8WW32 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 AL353719.1-201ENST00000566847 864 ntBASIC19.47■□□□□ 0.71
HMGB4Q8WW32 AC011558.1-201ENST00000623459 338 ntBASIC19.47■□□□□ 0.71
HMGB4Q8WW32 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 AL137060.1-201ENST00000618151 2648 ntBASIC19.47■□□□□ 0.71
HMGB4Q8WW32 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB4Q8WW32 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB4Q8WW32 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 FEM1AP1-201ENST00000431297 1995 ntBASIC19.45■□□□□ 0.7
HMGB4Q8WW32 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.45■□□□□ 0.7
HMGB4Q8WW32 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGB4Q8WW32 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms