Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 BX664615.1-201ENST00000443558 458 ntBASIC18.92■□□□□ 0.62
LMX1AQ8TE12 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 AC087388.1-201ENST00000571370 1112 ntBASIC18.92■□□□□ 0.62
LMX1AQ8TE12 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 AC009237.14-201ENST00000609975 1594 ntBASIC18.92■□□□□ 0.62
LMX1AQ8TE12 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1AQ8TE12 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 AK4P3-201ENST00000418260 669 ntBASIC18.91■□□□□ 0.62
LMX1AQ8TE12 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 WWOX-216ENST00000569818 525 ntBASIC18.91■□□□□ 0.62
LMX1AQ8TE12 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1AQ8TE12 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 AC007663.1-201ENST00000438948 1240 ntBASIC18.9■□□□□ 0.62
LMX1AQ8TE12 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 AL162377.1-201ENST00000618844 1793 ntBASIC18.9■□□□□ 0.62
LMX1AQ8TE12 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 GABARAPL3-202ENST00000624044 1851 ntBASIC18.9■□□□□ 0.62
LMX1AQ8TE12 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LMX1AQ8TE12 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LMX1AQ8TE12 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LMX1AQ8TE12 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LMX1AQ8TE12 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms