Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 AC244015.2-201ENST00000616358 1861 ntBASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 BX664615.1-201ENST00000443558 458 ntBASIC5.97□□□□□ -1.45
SYNE1Q8NF91 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 AL390955.1-201ENST00000428694 934 ntBASIC5.97□□□□□ -1.45
SYNE1Q8NF91 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SYNE1Q8NF91 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms