Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 AL359075.1-203ENST00000462729 1002 ntBASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 METTL23-204ENST00000586752 904 ntTSL 2 BASIC25.64■■□□□ 1.7
USHBP1Q8N6Y0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC25.64■■□□□ 1.69
USHBP1Q8N6Y0 KRT8P45-201ENST00000414328 1447 ntBASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 GXYLT1P6-201ENST00000456472 1187 ntBASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC25.63■■□□□ 1.69
USHBP1Q8N6Y0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 ANKRD20A18P-201ENST00000359341 492 ntBASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 AC091076.1-201ENST00000610741 619 ntBASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC25.62■■□□□ 1.69
USHBP1Q8N6Y0 AL162377.1-201ENST00000618844 1793 ntBASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 KRT18P38-201ENST00000449496 1282 ntBASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC25.61■■□□□ 1.69
USHBP1Q8N6Y0 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 KRT8P11-201ENST00000409686 1436 ntBASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
USHBP1Q8N6Y0 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms