Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 AC010203.1-204ENST00000548782 407 ntBASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 FAM207BP-201ENST00000447172 505 ntBASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 AC128688.1-201ENST00000487626 519 ntBASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 AL160286.2-201ENST00000567150 934 ntBASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 AC009237.14-201ENST00000609975 1594 ntBASIC19.49■□□□□ 0.71
HDDC3Q8N4P3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 AC091390.4-202ENST00000476426 537 ntBASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 Z85996.1-201ENST00000494644 937 ntBASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.48■□□□□ 0.71
HDDC3Q8N4P3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 UPK3BP1-201ENST00000428678 509 ntBASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 EGLN1P1-201ENST00000531623 762 ntBASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 AC091076.1-201ENST00000610741 619 ntBASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 LINC01465-201ENST00000408887 1940 ntBASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.47■□□□□ 0.71
HDDC3Q8N4P3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 TSPY14P-201ENST00000303979 915 ntBASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 AK4P3-201ENST00000418260 669 ntBASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 MFAP1P1-201ENST00000442257 1255 ntBASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms