Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.74■□□□□ 0.75
USP39Q53GS9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP39Q53GS9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.74■□□□□ 0.75
USP39Q53GS9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP39Q53GS9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.74■□□□□ 0.75
USP39Q53GS9 TUBB8P6-201ENST00000436895 1288 ntBASIC19.74■□□□□ 0.75
USP39Q53GS9 YBX1P10-201ENST00000444752 975 ntBASIC19.74■□□□□ 0.75
USP39Q53GS9 AC011506.1-201ENST00000474329 610 ntBASIC19.74■□□□□ 0.75
USP39Q53GS9 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.74■□□□□ 0.75
USP39Q53GS9 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
USP39Q53GS9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP39Q53GS9 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.74■□□□□ 0.75
USP39Q53GS9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.74■□□□□ 0.75
USP39Q53GS9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP39Q53GS9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.74■□□□□ 0.75
USP39Q53GS9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP39Q53GS9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
USP39Q53GS9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.73■□□□□ 0.75
USP39Q53GS9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
USP39Q53GS9 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
USP39Q53GS9 AK4P3-201ENST00000418260 669 ntBASIC19.73■□□□□ 0.75
USP39Q53GS9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
USP39Q53GS9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.73■□□□□ 0.75
USP39Q53GS9 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.73■□□□□ 0.75
USP39Q53GS9 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.73■□□□□ 0.75
USP39Q53GS9 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.73■□□□□ 0.75
USP39Q53GS9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.73■□□□□ 0.75
USP39Q53GS9 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
USP39Q53GS9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
USP39Q53GS9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
USP39Q53GS9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP39Q53GS9 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.73■□□□□ 0.75
USP39Q53GS9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
USP39Q53GS9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP39Q53GS9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
USP39Q53GS9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP39Q53GS9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP39Q53GS9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USP39Q53GS9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP39Q53GS9 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP39Q53GS9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP39Q53GS9 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP39Q53GS9 KRT16P6-202ENST00000425692 1426 ntBASIC19.72■□□□□ 0.75
USP39Q53GS9 AC004980.1-204ENST00000429707 299 ntBASIC19.72■□□□□ 0.75
USP39Q53GS9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.72■□□□□ 0.75
USP39Q53GS9 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.72■□□□□ 0.75
USP39Q53GS9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.72■□□□□ 0.75
USP39Q53GS9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.72■□□□□ 0.75
USP39Q53GS9 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.72■□□□□ 0.75
USP39Q53GS9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.72■□□□□ 0.75
USP39Q53GS9 AC116351.2-201ENST00000606540 1585 ntBASIC19.72■□□□□ 0.75
USP39Q53GS9 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
USP39Q53GS9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
USP39Q53GS9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.72■□□□□ 0.75
USP39Q53GS9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.72■□□□□ 0.75
USP39Q53GS9 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.71■□□□□ 0.75
USP39Q53GS9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.71■□□□□ 0.75
USP39Q53GS9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.71■□□□□ 0.75
USP39Q53GS9 SLC25A1P4-201ENST00000567977 778 ntBASIC19.71■□□□□ 0.75
USP39Q53GS9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
USP39Q53GS9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.71■□□□□ 0.75
USP39Q53GS9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
USP39Q53GS9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USP39Q53GS9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
USP39Q53GS9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP39Q53GS9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 TFP1-202ENST00000475455 1573 ntBASIC19.7■□□□□ 0.74
USP39Q53GS9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USP39Q53GS9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.7■□□□□ 0.74
USP39Q53GS9 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.7■□□□□ 0.74
USP39Q53GS9 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.7■□□□□ 0.74
USP39Q53GS9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.7■□□□□ 0.74
USP39Q53GS9 KRT18P16-201ENST00000510337 1294 ntBASIC19.7■□□□□ 0.74
USP39Q53GS9 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.7■□□□□ 0.74
USP39Q53GS9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms