Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 FEM1AP4-201ENST00000443167 1987 ntBASIC20.67■□□□□ 0.9
CHD9Q3L8U1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 SLC25A6P4-201ENST00000586535 553 ntBASIC20.67■□□□□ 0.9
CHD9Q3L8U1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 KRT18P1-202ENST00000452408 1331 ntBASIC20.66■□□□□ 0.9
CHD9Q3L8U1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 PHGDH-210ENST00000641115 1638 ntBASIC20.66■□□□□ 0.9
CHD9Q3L8U1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 AC079781.3-201ENST00000449110 356 ntBASIC20.66■□□□□ 0.9
CHD9Q3L8U1 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.66■□□□□ 0.9
CHD9Q3L8U1 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHD9Q3L8U1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CHD9Q3L8U1 AC121338.2-201ENST00000622535 1744 ntBASIC20.64■□□□□ 0.9
CHD9Q3L8U1 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
CHD9Q3L8U1 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.64■□□□□ 0.9
CHD9Q3L8U1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.64■□□□□ 0.9
CHD9Q3L8U1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHD9Q3L8U1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHD9Q3L8U1 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.64■□□□□ 0.89
CHD9Q3L8U1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CHD9Q3L8U1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 AL049796.1-201ENST00000565336 1766 ntBASIC20.62■□□□□ 0.89
CHD9Q3L8U1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 AC106795.1-205ENST00000512851 1056 ntBASIC20.62■□□□□ 0.89
CHD9Q3L8U1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 TSPY12P-201ENST00000421279 868 ntBASIC20.62■□□□□ 0.89
CHD9Q3L8U1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.62■□□□□ 0.89
CHD9Q3L8U1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms