Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL7A1Q02388 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC13.94□□□□□ -0.18
COL7A1Q02388 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL7A1Q02388 Z98882.1-201ENST00000622160 2253 ntBASIC13.94□□□□□ -0.18
COL7A1Q02388 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL7A1Q02388 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC13.94□□□□□ -0.18
COL7A1Q02388 AC106795.1-205ENST00000512851 1056 ntBASIC13.94□□□□□ -0.18
COL7A1Q02388 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.94□□□□□ -0.18
COL7A1Q02388 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC13.94□□□□□ -0.18
COL7A1Q02388 FBXW4P1-201ENST00000426721 2239 ntBASIC13.94□□□□□ -0.18
COL7A1Q02388 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL7A1Q02388 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL7A1Q02388 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC13.93□□□□□ -0.18
COL7A1Q02388 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL7A1Q02388 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC13.93□□□□□ -0.18
COL7A1Q02388 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC13.93□□□□□ -0.18
COL7A1Q02388 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC13.93□□□□□ -0.18
COL7A1Q02388 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC13.93□□□□□ -0.18
COL7A1Q02388 AL162741.1-201ENST00000565563 1558 ntBASIC13.93□□□□□ -0.18
COL7A1Q02388 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.93□□□□□ -0.18
COL7A1Q02388 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL7A1Q02388 TUB-203ENST00000534099 1759 ntTSL 2 BASIC13.93□□□□□ -0.18
COL7A1Q02388 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.93□□□□□ -0.18
COL7A1Q02388 MIR574-201ENST00000385209 96 ntBASIC13.93□□□□□ -0.18
COL7A1Q02388 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 KRT16P4-201ENST00000453883 522 ntBASIC13.93□□□□□ -0.18
COL7A1Q02388 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.93□□□□□ -0.18
COL7A1Q02388 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC13.93□□□□□ -0.18
COL7A1Q02388 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL7A1Q02388 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL7A1Q02388 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 TMEM179-206ENST00000616017 1645 ntBASIC13.92□□□□□ -0.18
COL7A1Q02388 MRPL3P1-201ENST00000400109 1033 ntBASIC13.92□□□□□ -0.18
COL7A1Q02388 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.92□□□□□ -0.18
COL7A1Q02388 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.92□□□□□ -0.18
COL7A1Q02388 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC13.92□□□□□ -0.18
COL7A1Q02388 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL7A1Q02388 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
COL7A1Q02388 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
COL7A1Q02388 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.92□□□□□ -0.18
COL7A1Q02388 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.92□□□□□ -0.18
COL7A1Q02388 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
COL7A1Q02388 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL7A1Q02388 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
COL7A1Q02388 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC13.91□□□□□ -0.18
COL7A1Q02388 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
COL7A1Q02388 WDR6-223ENST00000627177 207 ntTSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL7A1Q02388 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL7A1Q02388 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 KRT18P13-201ENST00000400056 1290 ntBASIC13.91□□□□□ -0.18
COL7A1Q02388 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 GLRB-205ENST00000512619 728 ntTSL 3 BASIC13.91□□□□□ -0.18
COL7A1Q02388 BX640515.1-201ENST00000617215 977 ntBASIC13.91□□□□□ -0.18
COL7A1Q02388 IL9RP2-201ENST00000423948 1312 ntBASIC13.91□□□□□ -0.18
COL7A1Q02388 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL7A1Q02388 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
COL7A1Q02388 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms